Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 RNU6-769P-201ENST00000384407 104 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 RNU6-809P-201ENST00000384461 107 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 SSXP10-201ENST00000402595 565 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AL049693.1-201ENST00000402760 611 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 Y_RNA.598-201ENST00000410480 95 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 RNU6-248P-201ENST00000410720 107 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 USP9YP13-201ENST00000417797 480 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AL513174.1-201ENST00000423182 629 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AL445669.1-201ENST00000426743 755 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 NPM1P34-201ENST00000428821 893 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC091862.1-201ENST00000438016 1100 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 USP9YP34-201ENST00000453983 808 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 BTF3P5-201ENST00000457252 467 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 KLF3P2-201ENST00000465138 268 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC007016.1-201ENST00000512110 244 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 OR5G4P-201ENST00000525251 760 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 OR5M7P-201ENST00000526140 972 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 OR5AP1P-201ENST00000529730 940 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 FKBP1BP1-201ENST00000553366 325 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC124068.1-201ENST00000563131 678 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC127024.5-201ENST00000580085 462 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC022916.3-201ENST00000592961 742 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AL159169.3-201ENST00000608871 561 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC000123.2-201ENST00000623124 461 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AL160394.1-201ENST00000624765 724 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AC099654.12-201ENST00000639868 649 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 RAD17P1-201ENST00000418130 2042 ntBASIC4.83□□□□□ -1.64
TDP1Q9NUW8 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 OR11H5P-202ENST00000641612 1325 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 RNU6-259P-201ENST00000383999 107 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 RNU6-178P-201ENST00000384631 104 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AL031679.1-201ENST00000400616 525 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AL356967.1-201ENST00000406305 431 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 RNU4-25P-201ENST00000410569 230 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AIMP1P1-201ENST00000418670 937 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 RAD23BP1-201ENST00000421404 1227 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 RSU1P2-202ENST00000437884 485 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC244505.5-201ENST00000443639 207 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 EIF4A1P11-201ENST00000451239 222 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AL033528.1-201ENST00000453780 140 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 MTND6P6-201ENST00000478031 263 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 LARP1BP2-201ENST00000486594 519 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 KCTD9P2-201ENST00000512203 1013 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC034159.1-201ENST00000513885 583 ntBASIC4.82□□□□□ -1.64
TDP1Q9NUW8 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC4.82□□□□□ -1.64
TDP1Q9NUW8 MTND4LP26-201ENST00000518144 282 ntBASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms