Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 ELOCP9-201ENST00000418624 239 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 Z97055.1-201ENST00000419730 712 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 MTCO2P21-201ENST00000419780 677 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 RPP40P1-201ENST00000426762 456 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 SEPT7P5-201ENST00000434048 306 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC084024.2-201ENST00000503480 791 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 SNX5P1-201ENST00000505757 1041 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC093755.1-201ENST00000512950 1023 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC093853.1-201ENST00000515689 483 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 RNU6-352P-201ENST00000516908 107 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC027309.2-201ENST00000520566 192 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 EEF1A1P37-201ENST00000522748 715 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AADACP1-206ENST00000561502 1193 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 MTCYBP28-201ENST00000566728 1132 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC234772.3-201ENST00000602277 528 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC006386.1-201ENST00000619436 415 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 RMST_9.1-201ENST00000619945 193 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC006927.4-201ENST00000639187 543 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 MARK2P15-201ENST00000432204 2186 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AP002001.2-201ENST00000529025 1469 ntBASIC3.84□□□□□ -1.8
CCDC3Q9BQI4 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC3Q9BQI4 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 MIR208A-201ENST00000362287 71 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AC119751.3-201ENST00000399720 670 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AL133264.1-201ENST00000407157 562 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 RPL31P2-201ENST00000413849 377 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 FCF1P2-201ENST00000415284 583 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 CRYBB2P1-203ENST00000415709 538 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 RPS24P7-201ENST00000416921 246 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 FABP3P2-201ENST00000453169 399 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 snoU13.7-201ENST00000459220 104 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 MYL12AP1-201ENST00000518490 515 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 IGHV3-32-201ENST00000519182 355 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AP000790.1-201ENST00000528891 737 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AC069240.1-201ENST00000548774 375 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AC115621.1-201ENST00000604653 858 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AC005344.1-201ENST00000613391 459 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AC022509.4-201ENST00000621404 572 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AP002782.1-201ENST00000623107 614 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 FAM157B-203ENST00000639350 358 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 AP004289.2-201ENST00000444413 1457 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 Z99496.1-201ENST00000469424 1477 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC3Q9BQI4 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 ZNF285B-201ENST00000561698 1767 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 DCAF13P3-201ENST00000561147 1334 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 NACA3P-201ENST00000359690 648 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms