Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RNU6-1207P-201ENST00000384343 107 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AL391361.1-201ENST00000405580 489 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AC073136.2-201ENST00000417282 849 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 MTCO2P12-201ENST00000427426 682 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 SAR1AP4-201ENST00000429225 591 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 CFL1P1-202ENST00000432948 411 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 HMGB3P9-201ENST00000441799 583 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AC103851.1-201ENST00000506833 274 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 SNORA19.2-201ENST00000516013 114 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 RNU6-277P-201ENST00000516272 106 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 RNU6-410P-201ENST00000517006 107 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AP003497.1-201ENST00000528472 562 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AL121821.2-201ENST00000556081 394 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AC009852.2-201ENST00000567898 485 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AC105429.2-201ENST00000610567 517 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AP001005.3-201ENST00000622049 129 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 AC079597.1-201ENST00000624306 508 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 MAPK10-338ENST00000641647 3362 ntBASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.14□□□□□ -1.59
PTCHD1Q96NR3 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 RNA5SP391-201ENST00000363456 119 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 RNU1-74P-201ENST00000384108 171 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 RNU6-1226P-201ENST00000384317 107 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 SNORA16A-201ENST00000384342 137 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 RNU1-77P-201ENST00000390868 162 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AL136116.1-201ENST00000403591 381 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 RN7SKP235-201ENST00000410662 305 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC069218.2-201ENST00000411665 344 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC009161.1-201ENST00000417306 376 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AL592293.2-201ENST00000422292 996 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC137499.1-201ENST00000427602 88 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 CYCSP6-201ENST00000434498 302 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 CYCSP12-201ENST00000437729 300 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC114495.1-201ENST00000441274 436 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC243772.1-201ENST00000451620 410 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AL121877.1-201ENST00000453704 622 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AL035090.1-201ENST00000454835 332 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 OR2AO1P-201ENST00000476497 403 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 EIF4EP3-201ENST00000498782 656 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC093767.1-201ENST00000504523 156 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 TMEM248P1-201ENST00000510579 951 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC104057.1-201ENST00000515547 497 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 SCARNA24.1-201ENST00000516465 137 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC107953.1-201ENST00000522216 297 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 MIR3176-201ENST00000582210 90 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC068790.3-201ENST00000602988 553 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AL022394.1-201ENST00000606979 292 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 MIR6826-201ENST00000617808 98 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC090617.10-201ENST00000624308 134 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC109446.4-201ENST00000623235 2755 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 AC006020.1-201ENST00000420179 1854 ntBASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
PTCHD1Q96NR3 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 131.8 ms