Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RPL23AP33-201ENST00000442301 452 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 Z99714.1-201ENST00000450463 807 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AC231760.1-201ENST00000498002 260 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 OR7H2P-201ENST00000513483 306 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 MRPS5P3-201ENST00000515577 166 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 MRPL49P2-201ENST00000521066 465 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AP001922.4-201ENST00000526967 290 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AC020978.7-201ENST00000575953 1187 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 SNORD53-201ENST00000579969 78 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 MIR6840-201ENST00000611937 71 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 uc_338.9-201ENST00000617424 182 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AC139769.3-201ENST00000618383 175 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AC073342.3-201ENST00000624211 193 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AC079597.1-201ENST00000624306 508 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC099654.7-201ENST00000635788 2127 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AL049780.3-201ENST00000624612 1583 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC092593.1-201ENST00000515413 1815 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 RPL21P132-201ENST00000331267 462 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 RNU6-50P-201ENST00000362356 103 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 RNA5SP37-201ENST00000365420 130 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 RNU4-52P-201ENST00000384209 138 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 RAB5CP1-201ENST00000395972 580 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 RNU4-65P-201ENST00000410473 140 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 RNA5SP38-201ENST00000410750 119 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 RPLP0P7-201ENST00000416050 667 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 FNDC3CP-201ENST00000420795 1155 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 WARS2P1-201ENST00000429678 537 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AL139132.1-201ENST00000431587 344 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 SNRPEP4-201ENST00000435815 279 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 ARL5AP2-201ENST00000444698 533 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 MRPL42P6-201ENST00000486397 371 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AL024509.2-201ENST00000493462 493 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC022973.2-201ENST00000520146 549 ntTSL 4 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC019227.1-201ENST00000526902 510 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AP001372.3-201ENST00000530510 609 ntTSL 2 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC087499.8-201ENST00000578406 226 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC024153.1-201ENST00000603103 365 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC010591.1-201ENST00000603941 649 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AL162713.1-201ENST00000604480 262 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 FP236240.3-201ENST00000623061 327 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 CCT8P1-201ENST00000413611 1657 ntBASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC1.69□□□□□ -2.14
LINC00643Q86TS7 AL122126.1-201ENST00000546905 1318 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 RLIMP1-201ENST00000339626 1680 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 SNORA51.11-201ENST00000384442 131 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms