Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.97□□□□□ -1.61
USP39Q53GS9 OR6K1P-201ENST00000456766 971 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 PMCHL2-203ENST00000457791 237 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 UBA52P3-201ENST00000491303 382 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.97□□□□□ -1.61
USP39Q53GS9 RPL7L1P13-201ENST00000511702 739 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 MTCO1P30-201ENST00000515244 580 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 RNY4P37-201ENST00000516225 96 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 RNU6-1004P-201ENST00000516584 111 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4.97□□□□□ -1.61
USP39Q53GS9 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 AP001893.2-201ENST00000526949 202 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.97□□□□□ -1.61
USP39Q53GS9 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.97□□□□□ -1.61
USP39Q53GS9 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AC068993.1-201ENST00000546724 589 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AC136618.2-201ENST00000575091 400 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.97□□□□□ -1.61
USP39Q53GS9 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
USP39Q53GS9 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AC020910.2-201ENST00000603635 610 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 AC018695.5-201ENST00000605872 315 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC4.97□□□□□ -1.61
USP39Q53GS9 AL590282.1-201ENST00000610379 1136 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 AL359535.1-201ENST00000612100 1087 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 AL442067.2-201ENST00000614033 363 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 AL445264.1-201ENST00000621719 171 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 AC019206.1-201ENST00000621938 425 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 ASNSP1-201ENST00000518311 1939 ntBASIC4.97□□□□□ -1.61
USP39Q53GS9 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
USP39Q53GS9 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
USP39Q53GS9 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
USP39Q53GS9 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.61
USP39Q53GS9 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
USP39Q53GS9 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.96□□□□□ -1.61
USP39Q53GS9 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.96□□□□□ -1.61
USP39Q53GS9 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
USP39Q53GS9 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
USP39Q53GS9 AC100778.3-201ENST00000580060 1750 ntBASIC4.96□□□□□ -1.61
USP39Q53GS9 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
USP39Q53GS9 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
USP39Q53GS9 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
USP39Q53GS9 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
USP39Q53GS9 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
USP39Q53GS9 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.96□□□□□ -1.62
USP39Q53GS9 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
USP39Q53GS9 Y_RNA.279-201ENST00000364763 95 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 Y_RNA.296-201ENST00000364930 108 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
USP39Q53GS9 RNU6-452P-201ENST00000384406 107 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 SNORA70.10-201ENST00000384515 134 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 RNU6-332P-201ENST00000391193 108 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AL035079.1-201ENST00000405210 287 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AL390316.1-201ENST00000406279 553 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 FAT1P1-201ENST00000406588 507 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 U3.32-201ENST00000408116 212 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.96□□□□□ -1.62
USP39Q53GS9 AC007738.1-201ENST00000413892 348 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 RPL6P29-201ENST00000414863 865 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 B3GALNT1P1-201ENST00000420569 975 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 GAPDHP49-201ENST00000421421 961 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.96□□□□□ -1.62
USP39Q53GS9 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.96□□□□□ -1.62
USP39Q53GS9 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AL356583.2-201ENST00000426536 280 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC4.96□□□□□ -1.62
USP39Q53GS9 FTH1P16-201ENST00000435241 552 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 ARPC3P1-201ENST00000437218 533 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 CACYBPP1-201ENST00000438592 684 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 RPL7AP61-201ENST00000443410 636 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.96□□□□□ -1.62
USP39Q53GS9 RGS5-217ENST00000451759 835 ntTSL 3 BASIC4.96□□□□□ -1.62
USP39Q53GS9 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.96□□□□□ -1.62
USP39Q53GS9 SNRPFP4-201ENST00000456366 242 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AC021205.1-201ENST00000468797 348 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 RPL21P6-201ENST00000479171 504 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.96□□□□□ -1.62
USP39Q53GS9 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC4.96□□□□□ -1.62
USP39Q53GS9 AC011352.3-201ENST00000505162 593 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.96□□□□□ -1.62
USP39Q53GS9 AC018710.1-201ENST00000506509 158 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.96□□□□□ -1.62
USP39Q53GS9 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
USP39Q53GS9 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.96□□□□□ -1.62
USP39Q53GS9 OR5AP1P-201ENST00000529730 940 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 OR4A45P-201ENST00000529954 901 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 OR6C73P-201ENST00000546432 358 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AL442663.2-201ENST00000554385 511 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AL157687.1-201ENST00000554853 619 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.96□□□□□ -1.62
USP39Q53GS9 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms