Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 MIR4503-201ENST00000582187 83 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 AC006116.3-201ENST00000592968 361 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 AL022345.1-201ENST00000607292 135 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SOX4Q06945 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.71□□□□□ -1.5
SOX4Q06945 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SOX4Q06945 AL034549.2-201ENST00000618285 3373 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SOX4Q06945 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SOX4Q06945 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SOX4Q06945 ASNSP3-201ENST00000451989 1306 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SOX4Q06945 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SOX4Q06945 KPNA2P2-201ENST00000419546 1489 ntBASIC5.71□□□□□ -1.5
SOX4Q06945 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SOX4Q06945 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SOX4Q06945 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SOX4Q06945 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.7□□□□□ -1.5
SOX4Q06945 PROS2P-201ENST00000474651 1951 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SOX4Q06945 SNORA17.1-201ENST00000362945 126 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 RN7SKP44-201ENST00000363602 316 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SOX4Q06945 AL583835.1-201ENST00000399570 407 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 HSPA8P15-201ENST00000401676 786 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 RN7SKP213-201ENST00000410746 298 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 AC009310.1-201ENST00000414414 451 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 DPPA2P2-201ENST00000418220 897 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SOX4Q06945 AC006548.1-201ENST00000427470 102 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC5.7□□□□□ -1.5
SOX4Q06945 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.7□□□□□ -1.5
SOX4Q06945 ERLEC1P1-201ENST00000433806 578 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC5.7□□□□□ -1.5
SOX4Q06945 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC5.7□□□□□ -1.5
SOX4Q06945 RPS11P7-201ENST00000442125 465 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 DDX3P2-201ENST00000446138 111 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 AC079781.2-201ENST00000446424 169 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 ARL2BPP10-201ENST00000446487 531 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 Z92846.1-201ENST00000456203 268 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 RPL7AP6-201ENST00000477943 801 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 AC090453.1-201ENST00000495560 436 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 HMGB3P15-201ENST00000507326 574 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SOX4Q06945 RNU6-794P-201ENST00000517261 64 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.7□□□□□ -1.5
SOX4Q06945 COX6CP5-201ENST00000527162 228 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 LARP7P2-201ENST00000575306 125 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 AC108738.1-201ENST00000603703 237 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 AL355598.1-201ENST00000604169 202 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 RNU6-89P-201ENST00000606519 100 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 AC118658.2-201ENST00000618697 459 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 AC091925.1-201ENST00000623204 462 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 AC079597.1-201ENST00000624306 508 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 CR381572.1-201ENST00000625098 102 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 AC119674.1-207ENST00000641355 633 ntBASIC5.7□□□□□ -1.5
SOX4Q06945 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SOX4Q06945 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SOX4Q06945 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
SOX4Q06945 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
SOX4Q06945 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SOX4Q06945 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
SOX4Q06945 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.7□□□□□ -1.5
SOX4Q06945 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.7□□□□□ -1.5
SOX4Q06945 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC5.7□□□□□ -1.5
SOX4Q06945 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.7□□□□□ -1.5
SOX4Q06945 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.7□□□□□ -1.5
SOX4Q06945 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
SOX4Q06945 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SOX4Q06945 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX4Q06945 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SOX4Q06945 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX4Q06945 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.69□□□□□ -1.5
SOX4Q06945 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SOX4Q06945 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.69□□□□□ -1.5
SOX4Q06945 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SOX4Q06945 Y_RNA.31-201ENST00000362574 102 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 U3.3-201ENST00000362986 216 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 RN7SKP186-201ENST00000365371 303 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 RNU6-444P-201ENST00000383988 108 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 RN7SKP126-201ENST00000411143 300 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 RN7SKP17-201ENST00000411242 351 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.69□□□□□ -1.5
SOX4Q06945 RN7SL329P-201ENST00000467740 299 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 AC068587.1-201ENST00000483613 781 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.69□□□□□ -1.5
SOX4Q06945 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC5.69□□□□□ -1.5
SOX4Q06945 AC108471.1-201ENST00000513977 287 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC5.69□□□□□ -1.5
SOX4Q06945 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.69□□□□□ -1.5
SOX4Q06945 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.69□□□□□ -1.5
SOX4Q06945 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.69□□□□□ -1.5
SOX4Q06945 AC024940.3-201ENST00000538551 316 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 AC068831.4-201ENST00000556118 109 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 MEG8-218ENST00000556720 456 ntTSL 3 BASIC5.69□□□□□ -1.5
SOX4Q06945 AC110588.1-201ENST00000559699 137 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 AL356432.3-201ENST00000568952 465 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 RN7SL708P-201ENST00000580952 299 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX4Q06945 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms