Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.55□□□□□ -1.84
CDX1P47902 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 RPS4XP5-202ENST00000449995 1334 ntBASIC3.55□□□□□ -1.84
CDX1P47902 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.55□□□□□ -1.84
CDX1P47902 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 AC021146.4-201ENST00000309229 279 ntBASIC3.55□□□□□ -1.84
CDX1P47902 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
CDX1P47902 RNU6-621P-201ENST00000364752 109 ntBASIC3.55□□□□□ -1.84
CDX1P47902 RNA5SP235-201ENST00000365411 114 ntBASIC3.55□□□□□ -1.84
CDX1P47902 ELOCP19-201ENST00000411919 318 ntBASIC3.55□□□□□ -1.84
CDX1P47902 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.55□□□□□ -1.84
CDX1P47902 AC019178.2-201ENST00000423595 505 ntBASIC3.55□□□□□ -1.84
CDX1P47902 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC3.55□□□□□ -1.84
CDX1P47902 AC073143.1-201ENST00000436316 395 ntBASIC3.55□□□□□ -1.84
CDX1P47902 AL138799.3-201ENST00000438968 350 ntBASIC3.55□□□□□ -1.84
CDX1P47902 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.55□□□□□ -1.84
CDX1P47902 HSPE1P28-201ENST00000443139 211 ntBASIC3.55□□□□□ -1.84
CDX1P47902 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC3.55□□□□□ -1.84
CDX1P47902 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.55□□□□□ -1.84
CDX1P47902 KCTD9P2-201ENST00000512203 1013 ntBASIC3.55□□□□□ -1.84
CDX1P47902 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC3.55□□□□□ -1.84
CDX1P47902 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.55□□□□□ -1.84
CDX1P47902 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.55□□□□□ -1.84
CDX1P47902 AC022861.1-201ENST00000522981 663 ntBASIC3.55□□□□□ -1.84
CDX1P47902 HSPA8P13-201ENST00000523715 472 ntBASIC3.55□□□□□ -1.84
CDX1P47902 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC3.55□□□□□ -1.84
CDX1P47902 OSBPL9P2-201ENST00000526582 1228 ntBASIC3.55□□□□□ -1.84
CDX1P47902 AC009643.1-201ENST00000532030 391 ntBASIC3.55□□□□□ -1.84
CDX1P47902 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC3.55□□□□□ -1.84
CDX1P47902 AC115286.1-201ENST00000604298 434 ntBASIC3.55□□□□□ -1.84
CDX1P47902 AC055876.5-201ENST00000605667 259 ntBASIC3.55□□□□□ -1.84
CDX1P47902 AC090246.1-201ENST00000616499 426 ntBASIC3.55□□□□□ -1.84
CDX1P47902 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.55□□□□□ -1.84
CDX1P47902 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.55□□□□□ -1.84
CDX1P47902 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.55□□□□□ -1.84
CDX1P47902 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.55□□□□□ -1.84
CDX1P47902 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
CDX1P47902 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.54□□□□□ -1.84
CDX1P47902 AC106871.1-201ENST00000568324 3102 ntBASIC3.54□□□□□ -1.84
CDX1P47902 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CDX1P47902 MTND5P24-201ENST00000438892 1767 ntBASIC3.54□□□□□ -1.84
CDX1P47902 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.54□□□□□ -1.84
CDX1P47902 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CDX1P47902 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CDX1P47902 FAM133CP-201ENST00000332869 704 ntBASIC3.54□□□□□ -1.84
CDX1P47902 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CDX1P47902 SNORA7.2-201ENST00000364446 145 ntBASIC3.54□□□□□ -1.84
CDX1P47902 RNU6-1181P-201ENST00000384191 106 ntBASIC3.54□□□□□ -1.84
CDX1P47902 RNU1-44P-201ENST00000384453 163 ntBASIC3.54□□□□□ -1.84
CDX1P47902 RNU6-83P-201ENST00000384568 112 ntBASIC3.54□□□□□ -1.84
CDX1P47902 USP9YP33-201ENST00000412220 421 ntBASIC3.54□□□□□ -1.84
CDX1P47902 AL008987.1-201ENST00000415528 237 ntBASIC3.54□□□□□ -1.84
CDX1P47902 RPS7P15-201ENST00000415804 584 ntBASIC3.54□□□□□ -1.84
CDX1P47902 HIGD1AP15-201ENST00000416198 280 ntBASIC3.54□□□□□ -1.84
CDX1P47902 MTCO3P12-201ENST00000416718 547 ntBASIC3.54□□□□□ -1.84
CDX1P47902 RPL22P18-201ENST00000417197 377 ntBASIC3.54□□□□□ -1.84
CDX1P47902 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.54□□□□□ -1.84
CDX1P47902 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC3.54□□□□□ -1.84
CDX1P47902 RPS25P9-201ENST00000435591 252 ntBASIC3.54□□□□□ -1.84
CDX1P47902 USP9YP35-201ENST00000435696 412 ntBASIC3.54□□□□□ -1.84
CDX1P47902 MTCO2P20-201ENST00000437339 673 ntBASIC3.54□□□□□ -1.84
CDX1P47902 AL591719.1-201ENST00000444669 744 ntBASIC3.54□□□□□ -1.84
CDX1P47902 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.54□□□□□ -1.84
CDX1P47902 VN1R32P-201ENST00000452234 905 ntBASIC3.54□□□□□ -1.84
CDX1P47902 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC3.54□□□□□ -1.84
CDX1P47902 BTF3P5-201ENST00000457252 467 ntBASIC3.54□□□□□ -1.84
CDX1P47902 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CDX1P47902 NDUFA5P9-201ENST00000472609 340 ntBASIC3.54□□□□□ -1.84
CDX1P47902 AC034244.1-201ENST00000507687 207 ntBASIC3.54□□□□□ -1.84
CDX1P47902 AC017037.1-201ENST00000508460 471 ntBASIC3.54□□□□□ -1.84
CDX1P47902 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.54□□□□□ -1.84
CDX1P47902 RNU5A-4P-201ENST00000516588 111 ntBASIC3.54□□□□□ -1.84
CDX1P47902 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.54□□□□□ -1.84
CDX1P47902 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.54□□□□□ -1.84
CDX1P47902 NARSP2-201ENST00000518524 679 ntBASIC3.54□□□□□ -1.84
CDX1P47902 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC3.54□□□□□ -1.84
CDX1P47902 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
CDX1P47902 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC3.54□□□□□ -1.84
CDX1P47902 OR5D17P-201ENST00000531492 978 ntBASIC3.54□□□□□ -1.84
CDX1P47902 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
CDX1P47902 AC126177.3-201ENST00000551839 688 ntBASIC3.54□□□□□ -1.84
CDX1P47902 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.54□□□□□ -1.84
CDX1P47902 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.54□□□□□ -1.84
CDX1P47902 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.54□□□□□ -1.84
CDX1P47902 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC3.54□□□□□ -1.84
CDX1P47902 AC012182.1-201ENST00000570133 895 ntBASIC3.54□□□□□ -1.84
CDX1P47902 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.54□□□□□ -1.84
CDX1P47902 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.54□□□□□ -1.84
CDX1P47902 VN1R82P-201ENST00000601481 356 ntBASIC3.54□□□□□ -1.84
CDX1P47902 AC022022.2-201ENST00000602989 360 ntBASIC3.54□□□□□ -1.84
CDX1P47902 AC025588.2-201ENST00000604851 466 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms