Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL049610.1-201ENST00000423374 372 ntBASIC4.52□□□□□ -1.69
CUX1P39880 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.52□□□□□ -1.69
CUX1P39880 RPL21P41-201ENST00000459863 264 ntBASIC4.52□□□□□ -1.69
CUX1P39880 AP003102.1-201ENST00000525638 661 ntBASIC4.52□□□□□ -1.69
CUX1P39880 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC4.52□□□□□ -1.69
CUX1P39880 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CUX1P39880 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC4.52□□□□□ -1.69
CUX1P39880 AC245291.1-201ENST00000419501 328 ntBASIC4.51□□□□□ -1.69
CUX1P39880 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.51□□□□□ -1.69
CUX1P39880 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC4.51□□□□□ -1.69
CUX1P39880 FAM60DP-201ENST00000524174 632 ntBASIC4.51□□□□□ -1.69
CUX1P39880 AC092608.2-201ENST00000624427 218 ntBASIC4.51□□□□□ -1.69
CUX1P39880 CTSLP2-204ENST00000629029 392 ntBASIC4.51□□□□□ -1.69
CUX1P39880 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CUX1P39880 RN7SKP223-201ENST00000410582 62 ntBASIC4.51□□□□□ -1.69
CUX1P39880 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.51□□□□□ -1.69
CUX1P39880 AC105402.2-201ENST00000438503 358 ntBASIC4.51□□□□□ -1.69
CUX1P39880 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.51□□□□□ -1.69
CUX1P39880 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC4.51□□□□□ -1.69
CUX1P39880 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CUX1P39880 AP000919.1-202ENST00000581139 1264 ntBASIC4.51□□□□□ -1.69
CUX1P39880 AC025946.2-201ENST00000603398 234 ntBASIC4.51□□□□□ -1.69
CUX1P39880 DLEU2_6.1-201ENST00000610536 112 ntBASIC4.51□□□□□ -1.69
CUX1P39880 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC4.51□□□□□ -1.69
CUX1P39880 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC4.51□□□□□ -1.69
CUX1P39880 AC063923.1-201ENST00000478982 1619 ntBASIC4.5□□□□□ -1.69
CUX1P39880 MIR26A1-201ENST00000362205 77 ntBASIC4.5□□□□□ -1.69
CUX1P39880 RPS20P5-201ENST00000434808 360 ntBASIC4.5□□□□□ -1.69
CUX1P39880 RPS29P6-201ENST00000438196 145 ntBASIC4.5□□□□□ -1.69
CUX1P39880 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC4.5□□□□□ -1.69
CUX1P39880 NECAP1P2-201ENST00000455668 727 ntBASIC4.5□□□□□ -1.69
CUX1P39880 AC021205.1-201ENST00000468797 348 ntBASIC4.5□□□□□ -1.69
CUX1P39880 AC096725.1-201ENST00000514266 313 ntBASIC4.5□□□□□ -1.69
CUX1P39880 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC4.5□□□□□ -1.69
CUX1P39880 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CUX1P39880 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CUX1P39880 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
CUX1P39880 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.49□□□□□ -1.69
CUX1P39880 RNA5SP383-201ENST00000362934 120 ntBASIC4.49□□□□□ -1.69
CUX1P39880 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC4.49□□□□□ -1.69
CUX1P39880 RNA5SP247-201ENST00000411181 105 ntBASIC4.49□□□□□ -1.69
CUX1P39880 YPEL5P1-201ENST00000419731 367 ntBASIC4.49□□□□□ -1.69
CUX1P39880 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.49□□□□□ -1.69
CUX1P39880 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.49□□□□□ -1.69
CUX1P39880 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.49□□□□□ -1.69
CUX1P39880 snoU13.15-201ENST00000459407 104 ntBASIC4.49□□□□□ -1.69
CUX1P39880 snoU13.26-201ENST00000459452 105 ntBASIC4.49□□□□□ -1.69
CUX1P39880 RPS29P21-201ENST00000496272 170 ntBASIC4.49□□□□□ -1.69
CUX1P39880 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC4.49□□□□□ -1.69
CUX1P39880 RPL7P20-201ENST00000520308 745 ntBASIC4.49□□□□□ -1.69
CUX1P39880 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC4.49□□□□□ -1.69
CUX1P39880 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
CUX1P39880 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CUX1P39880 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
CUX1P39880 TTN-204ENST00000360870 18218 ntTSL 5 BASIC4.48□□□□□ -1.69
CUX1P39880 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC4.48□□□□□ -1.69
CUX1P39880 MIR764-201ENST00000390811 85 ntBASIC4.48□□□□□ -1.69
CUX1P39880 RN7SKP192-201ENST00000411291 327 ntBASIC4.48□□□□□ -1.69
CUX1P39880 AC017078.1-201ENST00000416146 368 ntBASIC4.48□□□□□ -1.69
CUX1P39880 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.48□□□□□ -1.69
CUX1P39880 RN7SKP283-201ENST00000517197 270 ntBASIC4.48□□□□□ -1.69
CUX1P39880 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC4.48□□□□□ -1.69
CUX1P39880 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.48□□□□□ -1.69
CUX1P39880 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC4.48□□□□□ -1.69
CUX1P39880 AL122125.1-201ENST00000616999 600 ntBASIC4.48□□□□□ -1.69
CUX1P39880 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.48□□□□□ -1.69
CUX1P39880 NEAT1-202ENST00000501122 22743 ntBASIC4.48□□□□□ -1.69
CUX1P39880 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CUX1P39880 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
CUX1P39880 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CUX1P39880 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC4.47□□□□□ -1.69
CUX1P39880 RPS12P5-201ENST00000423449 371 ntBASIC4.47□□□□□ -1.69
CUX1P39880 AC099063.2-201ENST00000446360 662 ntBASIC4.47□□□□□ -1.69
CUX1P39880 RPL23AP23-201ENST00000452590 471 ntBASIC4.47□□□□□ -1.69
CUX1P39880 VWA8P1-201ENST00000510889 176 ntBASIC4.47□□□□□ -1.69
CUX1P39880 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC4.47□□□□□ -1.69
CUX1P39880 RN7SKP43-201ENST00000516173 320 ntBASIC4.47□□□□□ -1.69
CUX1P39880 EEF1A1P37-201ENST00000522748 715 ntBASIC4.47□□□□□ -1.69
CUX1P39880 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC4.47□□□□□ -1.69
CUX1P39880 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC4.47□□□□□ -1.69
CUX1P39880 ZNF861P-201ENST00000588126 639 ntBASIC4.47□□□□□ -1.69
CUX1P39880 AC007621.1-201ENST00000604544 437 ntBASIC4.47□□□□□ -1.69
CUX1P39880 AC010338.1-201ENST00000621823 717 ntBASIC4.47□□□□□ -1.69
CUX1P39880 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC4.47□□□□□ -1.69
CUX1P39880 SEPT7P2-202ENST00000398921 823 ntBASIC4.46□□□□□ -1.69
CUX1P39880 CACYBPP2-201ENST00000453625 678 ntBASIC4.46□□□□□ -1.69
CUX1P39880 OR5H5P-201ENST00000503164 928 ntBASIC4.46□□□□□ -1.69
CUX1P39880 AC112184.1-201ENST00000505179 312 ntBASIC4.46□□□□□ -1.69
CUX1P39880 RNU6-1231P-201ENST00000517185 103 ntBASIC4.46□□□□□ -1.69
CUX1P39880 IGKV3-31-201ENST00000523109 329 ntBASIC4.46□□□□□ -1.69
CUX1P39880 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC4.46□□□□□ -1.69
CUX1P39880 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.46□□□□□ -1.69
CUX1P39880 AC099654.11-201ENST00000638857 294 ntBASIC4.46□□□□□ -1.69
CUX1P39880 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CUX1P39880 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CUX1P39880 RNU6-805P-201ENST00000365643 106 ntBASIC4.46□□□□□ -1.7
CUX1P39880 RNU6ATAC3P-201ENST00000387974 126 ntBASIC4.46□□□□□ -1.7
CUX1P39880 RPL23AP15-201ENST00000450202 459 ntBASIC4.46□□□□□ -1.7
CUX1P39880 AC093278.1-201ENST00000494700 600 ntBASIC4.46□□□□□ -1.7
CUX1P39880 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 127.5 ms