Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.41□□□□□ -1.86
SDC1P18827 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.41□□□□□ -1.86
SDC1P18827 HSPE1P5-201ENST00000561489 272 ntBASIC3.41□□□□□ -1.86
SDC1P18827 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.41□□□□□ -1.86
SDC1P18827 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.41□□□□□ -1.86
SDC1P18827 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC3.41□□□□□ -1.86
SDC1P18827 MIR5685-201ENST00000579080 79 ntBASIC3.41□□□□□ -1.86
SDC1P18827 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.41□□□□□ -1.86
SDC1P18827 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.41□□□□□ -1.86
SDC1P18827 BNIP3P38-201ENST00000601117 544 ntBASIC3.41□□□□□ -1.86
SDC1P18827 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.41□□□□□ -1.86
SDC1P18827 AC073387.2-201ENST00000604797 784 ntBASIC3.41□□□□□ -1.86
SDC1P18827 AC024933.1-201ENST00000608472 348 ntBASIC3.41□□□□□ -1.86
SDC1P18827 AC090912.3-201ENST00000609775 533 ntBASIC3.41□□□□□ -1.86
SDC1P18827 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SDC1P18827 AC104985.3-201ENST00000623479 597 ntBASIC3.41□□□□□ -1.86
SDC1P18827 AC004943.3-201ENST00000624116 600 ntBASIC3.41□□□□□ -1.86
SDC1P18827 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SDC1P18827 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SDC1P18827 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
SDC1P18827 NMD3P1-201ENST00000439704 1488 ntBASIC3.41□□□□□ -1.86
SDC1P18827 SAGE4P-201ENST00000442271 3381 ntBASIC3.4□□□□□ -1.86
SDC1P18827 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.86
SDC1P18827 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.4□□□□□ -1.86
SDC1P18827 ELL2P4-201ENST00000446870 1376 ntBASIC3.4□□□□□ -1.86
SDC1P18827 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
SDC1P18827 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
SDC1P18827 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.4□□□□□ -1.86
SDC1P18827 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
SDC1P18827 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
SDC1P18827 ANKRD36P1-201ENST00000344424 659 ntBASIC3.4□□□□□ -1.87
SDC1P18827 RNU6-839P-201ENST00000363347 108 ntBASIC3.4□□□□□ -1.87
SDC1P18827 RNU6-441P-201ENST00000384545 106 ntBASIC3.4□□□□□ -1.87
SDC1P18827 SNORD116-23-201ENST00000384645 92 ntBASIC3.4□□□□□ -1.87
SDC1P18827 U8.11-201ENST00000384699 133 ntBASIC3.4□□□□□ -1.87
SDC1P18827 U8.12-201ENST00000384701 133 ntBASIC3.4□□□□□ -1.87
SDC1P18827 AC007066.1-201ENST00000392902 381 ntBASIC3.4□□□□□ -1.87
SDC1P18827 AC136624.1-201ENST00000400791 413 ntBASIC3.4□□□□□ -1.87
SDC1P18827 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.4□□□□□ -1.87
SDC1P18827 RPS3AP9-201ENST00000417027 792 ntBASIC3.4□□□□□ -1.87
SDC1P18827 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.4□□□□□ -1.87
SDC1P18827 AC017083.1-201ENST00000428093 483 ntBASIC3.4□□□□□ -1.87
SDC1P18827 OR51AB1P-201ENST00000429046 620 ntBASIC3.4□□□□□ -1.87
SDC1P18827 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.4□□□□□ -1.87
SDC1P18827 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.4□□□□□ -1.87
SDC1P18827 MTCYBP42-201ENST00000444653 1130 ntBASIC3.4□□□□□ -1.87
SDC1P18827 COX6CP18-201ENST00000448769 222 ntBASIC3.4□□□□□ -1.87
SDC1P18827 MRPS31P2-201ENST00000451581 518 ntBASIC3.4□□□□□ -1.87
SDC1P18827 NPM1P13-201ENST00000452663 865 ntBASIC3.4□□□□□ -1.87
SDC1P18827 U8.18-201ENST00000459285 133 ntBASIC3.4□□□□□ -1.87
SDC1P18827 RN7SL385P-201ENST00000468873 276 ntBASIC3.4□□□□□ -1.87
SDC1P18827 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SDC1P18827 PRELID3BP6-201ENST00000503839 571 ntBASIC3.4□□□□□ -1.87
SDC1P18827 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.4□□□□□ -1.87
SDC1P18827 AC119751.4-201ENST00000507498 357 ntBASIC3.4□□□□□ -1.87
SDC1P18827 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.4□□□□□ -1.87
SDC1P18827 ARL2BPP6-201ENST00000512757 439 ntBASIC3.4□□□□□ -1.87
SDC1P18827 RNU2-27P-201ENST00000516185 142 ntBASIC3.4□□□□□ -1.87
SDC1P18827 RNA5SP135-201ENST00000517019 125 ntBASIC3.4□□□□□ -1.87
SDC1P18827 RANP9-201ENST00000519957 271 ntBASIC3.4□□□□□ -1.87
SDC1P18827 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SDC1P18827 OR4C2P-201ENST00000530855 1064 ntBASIC3.4□□□□□ -1.87
SDC1P18827 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.4□□□□□ -1.87
SDC1P18827 AC026333.2-201ENST00000542164 106 ntBASIC3.4□□□□□ -1.87
SDC1P18827 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.4□□□□□ -1.87
SDC1P18827 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.4□□□□□ -1.87
SDC1P18827 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.4□□□□□ -1.87
SDC1P18827 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.4□□□□□ -1.87
SDC1P18827 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.4□□□□□ -1.87
SDC1P18827 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.4□□□□□ -1.87
SDC1P18827 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC3.4□□□□□ -1.87
SDC1P18827 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.4□□□□□ -1.87
SDC1P18827 MIR4425-201ENST00000580572 84 ntBASIC3.4□□□□□ -1.87
SDC1P18827 AC096947.1-201ENST00000603233 470 ntBASIC3.4□□□□□ -1.87
SDC1P18827 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.4□□□□□ -1.87
SDC1P18827 LLPHP1-201ENST00000603571 367 ntBASIC3.4□□□□□ -1.87
SDC1P18827 AC067959.1-201ENST00000604334 379 ntBASIC3.4□□□□□ -1.87
SDC1P18827 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.4□□□□□ -1.87
SDC1P18827 AL121652.1-201ENST00000608851 448 ntBASIC3.4□□□□□ -1.87
SDC1P18827 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SDC1P18827 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.4□□□□□ -1.87
SDC1P18827 AC006065.5-201ENST00000623427 349 ntBASIC3.4□□□□□ -1.87
SDC1P18827 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.4□□□□□ -1.87
SDC1P18827 AL445984.1-201ENST00000637834 659 ntBASIC3.4□□□□□ -1.87
SDC1P18827 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.4□□□□□ -1.87
SDC1P18827 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SDC1P18827 PRO1804-201ENST00000623780 2050 ntBASIC3.4□□□□□ -1.87
SDC1P18827 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SDC1P18827 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.4□□□□□ -1.87
SDC1P18827 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SDC1P18827 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.4□□□□□ -1.87
SDC1P18827 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SDC1P18827 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SDC1P18827 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SDC1P18827 AC106871.1-201ENST00000568324 3102 ntBASIC3.39□□□□□ -1.87
SDC1P18827 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.39□□□□□ -1.87
SDC1P18827 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SDC1P18827 RNU6-582P-201ENST00000362989 107 ntBASIC3.39□□□□□ -1.87
SDC1P18827 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
SDC1P18827 RNU6-921P-201ENST00000384361 107 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms