Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
CHMP4AQ9BY43 RNA5SP196-201ENST00000625967 102 ntBASIC5.29□□□□□ -1.56
CHMP4AQ9BY43 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC5.29□□□□□ -1.56
CHMP4AQ9BY43 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
CHMP4AQ9BY43 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
CHMP4AQ9BY43 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CHMP4AQ9BY43 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 MTCO1P23-201ENST00000415223 1526 ntBASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 AL079342.2-201ENST00000403367 482 ntBASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 AL159169.1-201ENST00000421119 127 ntBASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 MTCYBP34-201ENST00000439552 670 ntBASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 RPL6P9-201ENST00000466502 859 ntBASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 AC017037.1-201ENST00000508460 471 ntBASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 MTND1P36-201ENST00000522384 936 ntBASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 MTND5P21-201ENST00000531961 522 ntBASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 CYP4A43P-201ENST00000568156 121 ntBASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 AC091946.2-201ENST00000606105 291 ntBASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 AL583856.2-201ENST00000606298 543 ntBASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 AC093673.2-201ENST00000609674 331 ntBASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 PLCE1P1-201ENST00000622094 305 ntBASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 MFSD8-245ENST00000641743 948 ntBASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC5.28□□□□□ -1.56
CHMP4AQ9BY43 AC005183.1-201ENST00000603687 1979 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 SPRR2C-201ENST00000290702 219 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 MIR448-201ENST00000362131 111 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 SNORA57.1-201ENST00000391227 145 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 U3.29-201ENST00000391296 212 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 TPT1P2-201ENST00000413105 503 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 BTF3P8-201ENST00000414577 526 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 KRR1P1-201ENST00000419430 803 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 USP9YP21-201ENST00000420603 432 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 USP12PY-201ENST00000427677 1064 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 SGO1P2-201ENST00000429458 1589 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 BMS1P19-201ENST00000433925 393 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 MTCYBP11-201ENST00000447254 1109 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 RN7SL585P-201ENST00000470538 280 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 RN7SL132P-201ENST00000478131 296 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 TAF8-207ENST00000482432 556 ntTSL 2 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AC093278.1-201ENST00000494700 600 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 ENSA-210ENST00000503241 574 ntTSL 3 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 MYL12AP1-201ENST00000518490 515 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 LRRC6P1-201ENST00000532188 885 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AC092851.1-201ENST00000535964 478 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AC091516.1-201ENST00000549191 703 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AC012417.1-201ENST00000582307 1039 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 MIR6867-201ENST00000610636 67 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AC068831.8-201ENST00000620171 435 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AC008785.1-201ENST00000624475 456 ntBASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 FTO-223ENST00000640179 210 ntTSL 5 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CHMP4AQ9BY43 AL136520.1-201ENST00000600311 1322 ntBASIC5.26□□□□□ -1.57
CHMP4AQ9BY43 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC5.26□□□□□ -1.57
CHMP4AQ9BY43 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
CHMP4AQ9BY43 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC5.26□□□□□ -1.57
CHMP4AQ9BY43 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CHMP4AQ9BY43 RNU11-4P-201ENST00000391149 133 ntBASIC5.26□□□□□ -1.57
CHMP4AQ9BY43 RNU6-628P-201ENST00000410675 107 ntBASIC5.26□□□□□ -1.57
CHMP4AQ9BY43 HSPE1P12-201ENST00000412576 301 ntBASIC5.26□□□□□ -1.57
CHMP4AQ9BY43 RPL21P109-201ENST00000422213 475 ntBASIC5.26□□□□□ -1.57
CHMP4AQ9BY43 AC011242.1-201ENST00000433596 1158 ntBASIC5.26□□□□□ -1.57
CHMP4AQ9BY43 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC5.26□□□□□ -1.57
CHMP4AQ9BY43 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC5.26□□□□□ -1.57
CHMP4AQ9BY43 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC5.26□□□□□ -1.57
CHMP4AQ9BY43 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms