Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 CFL1P1-202ENST00000432948 411 ntBASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AC004866.2-201ENST00000438285 481 ntBASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 MTCO3P18-201ENST00000440206 761 ntBASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AC006480.1-201ENST00000449887 378 ntBASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 RPS23P2-201ENST00000463671 415 ntBASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 RNA5SP34-201ENST00000516887 130 ntBASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AF186190.1-201ENST00000517470 480 ntBASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AC104383.1-201ENST00000530297 370 ntBASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AC118273.2-201ENST00000532092 465 ntBASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 GMFG-212ENST00000602185 423 ntTSL 3 BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AC013244.1-201ENST00000604279 193 ntBASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 MIR8080-201ENST00000622224 89 ntBASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AC243312.2-201ENST00000623340 601 ntBASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 CASC19-264ENST00000641912 1184 ntBASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
TRAIPQ9BWF2 AC002525.1-201ENST00000624392 1622 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AC073343.1-201ENST00000328239 651 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 RNA5SP234-201ENST00000363916 119 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 RNU6-1074P-201ENST00000383995 104 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 MIR130A-201ENST00000385274 89 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AL136372.1-201ENST00000403060 228 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 MIR1286-201ENST00000408112 78 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 METTL15P3-201ENST00000415522 1221 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 ZNF90P2-204ENST00000419323 1075 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AL139413.1-201ENST00000421309 217 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AL355433.1-201ENST00000422804 300 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 RBMY2QP-201ENST00000429799 1147 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AL627308.1-201ENST00000435693 821 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 SEPT14P3-201ENST00000439401 183 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AL732372.2-207ENST00000445840 183 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AC016696.1-201ENST00000446949 318 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 VN1R34P-201ENST00000447387 883 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 SEPT14P2-201ENST00000453405 183 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 RNU7-63P-201ENST00000459054 62 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AC100832.1-201ENST00000471945 383 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 RPL32P9-201ENST00000487963 407 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 RN7SL547P-201ENST00000490793 290 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 SEPT14P4-201ENST00000513445 186 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 FTH1P11-201ENST00000517577 551 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 FO082796.1-201ENST00000523795 183 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AL031666.3-201ENST00000609320 1006 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AC103710.2-201ENST00000609912 942 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AP002505.2-201ENST00000623585 696 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 SAMMSON-226ENST00000642089 1582 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AC004925.1-201ENST00000624256 2706 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 GABPAP-201ENST00000419271 1356 ntBASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
TRAIPQ9BWF2 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 ZNF680P1-201ENST00000436625 1469 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 178.5 ms