Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC026368.1-201ENST00000614934 690 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AL158163.2-201ENST00000619110 700 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AL139089.1-201ENST00000620372 975 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC244100.1-202ENST00000621554 382 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 MAPK10-373ENST00000641983 6772 ntBASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.86□□□□□ -1.79
CCDC3Q9BQI4 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 NOL8P1-201ENST00000508336 3529 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 RNA5SP97-201ENST00000365006 84 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 DSTNP4-201ENST00000399472 474 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 XKRYP1-201ENST00000423438 492 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 NPM1P34-201ENST00000428821 893 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 YME1L1P1-201ENST00000429435 297 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 HIGD1AP4-201ENST00000430194 280 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 USP9YP31-201ENST00000431405 881 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 XKRYP2-201ENST00000432915 492 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 MTCO2P25-201ENST00000447065 681 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 COX6CP18-201ENST00000448769 222 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AL645939.1-201ENST00000453429 797 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 RFC5P1-201ENST00000454419 874 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 RPS3AP6-201ENST00000484430 795 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 RN7SL271P-201ENST00000487601 295 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AC011352.3-201ENST00000505162 593 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AC109471.1-201ENST00000511631 612 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 RNU6-885P-201ENST00000516607 104 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AC087808.1-201ENST00000520501 361 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AC124068.1-201ENST00000563131 678 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 EIF5A2P1-201ENST00000564027 460 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AC079171.1-201ENST00000568788 914 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 MIR4458-201ENST00000578872 75 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 BNIP3P26-201ENST00000600827 554 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AC022022.2-201ENST00000602989 360 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AC010680.3-201ENST00000604215 520 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 SNORA51-201ENST00000606420 132 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AC078899.5-201ENST00000612475 178 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AL591424.2-201ENST00000617023 128 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 MTND4P10-201ENST00000446199 1363 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 LINC02471-203ENST00000641941 4752 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC3Q9BQI4 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 AC097504.1-201ENST00000515103 2415 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 SNORD46.1-201ENST00000364139 104 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 SNORA73.2-201ENST00000364946 201 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 MIR513B-201ENST00000385136 84 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 RPL7AP73-201ENST00000413490 353 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 LUZP4P1-201ENST00000415420 344 ntBASIC3.84□□□□□ -1.79
CCDC3Q9BQI4 NUP35P2-201ENST00000416748 943 ntBASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms