Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS39Q96JC1 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC099563.1-201ENST00000456086 418 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 OR9M1P-201ENST00000459641 921 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 RPL7L1P8-201ENST00000469911 741 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC022034.3-201ENST00000471393 478 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC012181.1-201ENST00000479895 423 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 RPL12P22-201ENST00000519073 490 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC092451.2-201ENST00000538746 658 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC010198.2-201ENST00000550612 259 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 MTND4LP25-201ENST00000570218 163 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 MIR4697-201ENST00000582977 78 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 KLKP1-201ENST00000595979 403 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC006254.3-201ENST00000603353 884 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 VN1R9P-201ENST00000614184 867 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 AC090116.1-201ENST00000615679 446 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS39Q96JC1 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 AL136164.4-201ENST00000625013 2135 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 AL365440.1-201ENST00000436135 2167 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS39Q96JC1 AC021755.1-201ENST00000559747 1447 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 AC002546.1-201ENST00000588041 2504 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
VPS39Q96JC1 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS39Q96JC1 RNA5SP258-201ENST00000362750 119 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 OR6K3-202ENST00000368146 996 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
VPS39Q96JC1 RNU6-921P-201ENST00000384361 107 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 SOD2P1-201ENST00000396543 562 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 OR51A3P-201ENST00000413596 924 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 HMGB3P20-201ENST00000417997 600 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 FO393414.1-201ENST00000428697 1184 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 AL117339.2-201ENST00000430475 180 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 OR4C10P-201ENST00000434991 931 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 NDUFB1P1-201ENST00000435191 180 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 AC004022.1-201ENST00000447766 1066 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 RPL7P55-201ENST00000450522 746 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 SSXP4-201ENST00000451349 245 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 RPL32P14-201ENST00000463196 378 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 AC092902.1-201ENST00000486999 259 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 MTCO2P9-201ENST00000503214 694 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 AC121161.1-201ENST00000510606 652 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 PRELID3BP4-201ENST00000515476 571 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 RNU1-61P-201ENST00000516107 151 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 SCARNA14-201ENST00000516903 136 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 RNU6-352P-201ENST00000516908 107 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 CYCSP30-201ENST00000546447 172 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 AC007224.1-201ENST00000564410 144 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 AGGF1P6-201ENST00000569213 976 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 RN7SL622P-201ENST00000585292 275 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
VPS39Q96JC1 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 ZYXP1-201ENST00000617638 118 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.72□□□□□ -1.81
VPS39Q96JC1 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.72□□□□□ -1.81
VPS39Q96JC1 AC117529.2-201ENST00000512159 2068 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 149.9 ms