Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC246680.2-201ENST00000422106 389 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 GLRXP1-201ENST00000423261 334 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 DUTP6-201ENST00000425573 462 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AL035410.1-201ENST00000427409 427 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AL358472.1-201ENST00000431295 329 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 BTF3P10-201ENST00000433415 495 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 HIGD1AP11-201ENST00000438361 280 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC006011.1-201ENST00000442758 349 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 RPL7P59-201ENST00000447700 943 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 MTCO3P2-201ENST00000457365 171 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 HMGN2P13-201ENST00000476476 274 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC091959.2-201ENST00000477363 321 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC041039.1-201ENST00000485656 536 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 RPL7P24-201ENST00000493052 752 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 RNA5SP49-201ENST00000516450 115 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 RNA5SP519-201ENST00000516480 119 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC105233.3-201ENST00000531125 744 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC018630.1-201ENST00000541376 925 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 Z82195.1-201ENST00000604558 398 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AL591034.3-201ENST00000605511 685 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC016877.3-201ENST00000606778 504 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC068831.7-201ENST00000616954 363 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC091905.1-201ENST00000624400 311 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AL590396.4-201ENST00000636779 956 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 LARP1BP1-201ENST00000506036 1359 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 SPRR2C-201ENST00000290702 219 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 RNU6-609P-201ENST00000365459 107 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 RNU6-481P-201ENST00000384194 107 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC109780.2-201ENST00000413467 845 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AL357078.2-201ENST00000416486 427 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 MRPL50P1-201ENST00000431951 384 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 SKP1P1-201ENST00000438081 489 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 MTCYBP34-201ENST00000439552 670 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 HMGB1P37-201ENST00000439613 609 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 NDUFA5P7-201ENST00000452914 242 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AL139099.1-201ENST00000497398 403 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 RPS27AP13-201ENST00000498403 237 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC118282.2-201ENST00000508739 374 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC025768.1-201ENST00000510057 267 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC010265.1-201ENST00000513509 211 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 RN7SKP83-201ENST00000516512 178 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC087481.2-201ENST00000565492 330 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC025627.2-201ENST00000576220 160 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 MIR3908-201ENST00000579798 126 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 MIR4286-201ENST00000580651 93 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC067959.1-201ENST00000604334 379 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 RNU4-89P-201ENST00000607443 133 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC097460.3-201ENST00000623099 442 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AP006248.3-201ENST00000623580 594 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC073592.7-201ENST00000623659 507 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 SNORA50A-202ENST00000629536 136 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AL163152.1-201ENST00000642001 374 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 SGO1P2-201ENST00000429458 1589 ntBASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AC092326.2-201ENST00000624772 1561 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms