Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 MIR345-201ENST00000362114 98 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 RNU6-335P-201ENST00000364563 113 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 RNU6-301P-201ENST00000384277 107 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 SNORD15B-201ENST00000384714 146 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 MIR627-201ENST00000384979 97 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 RN7SKP213-201ENST00000410746 298 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 Z75741.2-201ENST00000417272 1167 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 TOMM22P1-201ENST00000418578 312 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 TBX18-AS1-201ENST00000423086 421 ntTSL 3 BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AC073143.1-201ENST00000436316 395 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 DPPA3P1-201ENST00000448050 469 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 SNORD105B-201ENST00000458770 79 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AC133134.1-201ENST00000466800 359 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AC091167.1-201ENST00000492017 396 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 PRELID3BP6-201ENST00000503839 571 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 RNU6-352P-201ENST00000516908 107 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AC092868.3-201ENST00000560515 784 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 MIR5092-201ENST00000583139 88 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AC010620.2-201ENST00000600135 313 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AC119501.1-201ENST00000603646 475 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AC243654.2-201ENST00000612843 443 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AC005899.6-201ENST00000620729 297 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 AC116563.2-201ENST00000624751 535 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 CYP3A51P-201ENST00000633513 256 ntBASIC1.72□□□□□ -2.13
LINC00643Q86TS7 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
LINC00643Q86TS7 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 CPD-202ENST00000543464 4007 ntTSL 2 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC080100.1-201ENST00000624239 5356 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC073325.2-201ENST00000339545 159 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 MIRLET7G-201ENST00000362280 84 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 EIF5P1-201ENST00000400019 1231 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 RNU6ATAC16P-201ENST00000408591 138 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 MTND1P23-201ENST00000416931 372 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AL513043.1-201ENST00000439124 535 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC003982.1-202ENST00000469928 248 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC087879.1-201ENST00000474343 374 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 ATP5LP3-201ENST00000514223 304 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 MTCO1P47-201ENST00000523889 1271 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 TOMM20P1-201ENST00000534518 427 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC123904.3-201ENST00000547218 814 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC006130.2-201ENST00000586202 326 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC112230.1-201ENST00000604342 547 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC113194.1-201ENST00000606037 500 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC112503.2-201ENST00000609005 552 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC245517.5-201ENST00000611529 162 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 NF1P10-201ENST00000613227 742 ntBASIC1.71□□□□□ -2.14
LINC00643Q86TS7 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
LINC00643Q86TS7 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 RNU1-100P-201ENST00000365255 165 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 RNU1-64P-201ENST00000365443 163 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 DHFRP5-201ENST00000406944 564 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AL137014.1-201ENST00000420490 1226 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AL645937.1-202ENST00000421799 937 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AC092427.1-202ENST00000430569 476 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 AL365440.1-201ENST00000436135 2167 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 CBX1P1-201ENST00000440184 427 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 PGBD4P3-201ENST00000440731 581 ntBASIC1.7□□□□□ -2.14
LINC00643Q86TS7 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms