Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC104027.1-201ENST00000521887 300 ntBASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 NPM1P24-201ENST00000428039 894 ntBASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 RNU7-157P-201ENST00000459600 66 ntBASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 AL049874.4-201ENST00000557593 255 ntBASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 AC079089.3-201ENST00000603094 673 ntBASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 AC107027.3-201ENST00000565095 3473 ntBASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 RNU6-984P-201ENST00000363236 109 ntBASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 RANP7-201ENST00000418085 644 ntBASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 GTF2IP23-201ENST00000423746 351 ntBASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 RN7SL20P-201ENST00000488827 297 ntBASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 AC138761.3-201ENST00000579993 334 ntBASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 uc_338.1-201ENST00000612113 180 ntBASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 GABRG2-229ENST00000641017 3628 ntBASIC3.59□□□□□ -1.83
CCDC88AQ3V6T2 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC88AQ3V6T2 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 MIR196B-201ENST00000384852 84 ntBASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 SEPT7P2-202ENST00000398921 823 ntBASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 HMGB3P6-201ENST00000444896 598 ntBASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 AC107918.3-201ENST00000533272 382 ntBASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 HMGB3P26-201ENST00000560051 582 ntBASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 AC106734.1-201ENST00000568646 663 ntBASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 AC022509.4-201ENST00000621404 572 ntBASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 AC007342.7-201ENST00000624610 2337 ntBASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 RN7SKP223-201ENST00000410582 62 ntBASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 RAB28P3-201ENST00000448325 597 ntBASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 UBL5P3-201ENST00000475112 231 ntBASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 AC008413.1-201ENST00000511864 177 ntBASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 AL139286.1-201ENST00000604465 483 ntBASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 AC010809.3-201ENST00000621310 641 ntBASIC3.58□□□□□ -1.84
CCDC88AQ3V6T2 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 RNU6-304P-201ENST00000364855 107 ntBASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 MIR3074-201ENST00000384885 81 ntBASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 AC110754.1-201ENST00000399740 601 ntBASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 SKINT1L-201ENST00000401057 817 ntBASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 AC063976.3-201ENST00000426849 329 ntBASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 RPS3P1-201ENST00000456781 192 ntBASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 Y_RNA.673-201ENST00000516306 88 ntBASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 RN7SKP283-201ENST00000517197 270 ntBASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 BMS1P7-201ENST00000602440 1052 ntBASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC88AQ3V6T2 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 FAM133CP-201ENST00000332869 704 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 RNA5SP68-201ENST00000363885 119 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 SNORA46-201ENST00000384762 135 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 AL445528.1-201ENST00000426330 420 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 NAP1L4P3-201ENST00000432820 1147 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 RN7SL442P-201ENST00000473804 320 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 AC005921.1-201ENST00000510589 286 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 150.2 ms