Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4.24□□□□□ -1.73
MSH6P52701 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.24□□□□□ -1.73
MSH6P52701 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.24□□□□□ -1.73
MSH6P52701 RPL31P53-201ENST00000457065 348 ntBASIC4.24□□□□□ -1.73
MSH6P52701 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.24□□□□□ -1.73
MSH6P52701 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
MSH6P52701 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.24□□□□□ -1.73
MSH6P52701 EIF1AXP2-201ENST00000555940 413 ntBASIC4.24□□□□□ -1.73
MSH6P52701 AL049874.4-201ENST00000557593 255 ntBASIC4.24□□□□□ -1.73
MSH6P52701 CYCSP39-201ENST00000565821 309 ntBASIC4.24□□□□□ -1.73
MSH6P52701 AC106734.1-201ENST00000568646 663 ntBASIC4.24□□□□□ -1.73
MSH6P52701 MIR5047-201ENST00000579212 100 ntBASIC4.24□□□□□ -1.73
MSH6P52701 RMST_8.1-201ENST00000610287 165 ntBASIC4.24□□□□□ -1.73
MSH6P52701 AL590808.1-201ENST00000618696 141 ntBASIC4.24□□□□□ -1.73
MSH6P52701 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.24□□□□□ -1.73
MSH6P52701 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.24□□□□□ -1.73
MSH6P52701 ELF2P3-201ENST00000445099 1506 ntBASIC4.23□□□□□ -1.73
MSH6P52701 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
MSH6P52701 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
MSH6P52701 RNU6-670P-201ENST00000364312 104 ntBASIC4.23□□□□□ -1.73
MSH6P52701 CD2-201ENST00000369477 478 ntTSL 2 BASIC4.23□□□□□ -1.73
MSH6P52701 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC4.23□□□□□ -1.73
MSH6P52701 RNU6-891P-201ENST00000384280 111 ntBASIC4.23□□□□□ -1.73
MSH6P52701 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
MSH6P52701 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH6P52701 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH6P52701 AC128713.1-201ENST00000471495 306 ntBASIC4.23□□□□□ -1.73
MSH6P52701 TRBV8-2-201ENST00000475637 270 ntBASIC4.23□□□□□ -1.73
MSH6P52701 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.23□□□□□ -1.73
MSH6P52701 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC4.23□□□□□ -1.73
MSH6P52701 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.23□□□□□ -1.73
MSH6P52701 SCARNA20.6-201ENST00000517251 106 ntBASIC4.23□□□□□ -1.73
MSH6P52701 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH6P52701 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC4.23□□□□□ -1.73
MSH6P52701 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.23□□□□□ -1.73
MSH6P52701 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
MSH6P52701 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4.23□□□□□ -1.73
MSH6P52701 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSH6P52701 CNOT6LP1-201ENST00000559681 1462 ntBASIC4.22□□□□□ -1.73
MSH6P52701 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSH6P52701 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSH6P52701 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSH6P52701 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.22□□□□□ -1.73
MSH6P52701 MIR3074-201ENST00000384885 81 ntBASIC4.22□□□□□ -1.73
MSH6P52701 MIR504-201ENST00000385065 83 ntBASIC4.22□□□□□ -1.73
MSH6P52701 MIR887-201ENST00000401258 79 ntBASIC4.22□□□□□ -1.73
MSH6P52701 RPL5P19-201ENST00000404228 893 ntBASIC4.22□□□□□ -1.73
MSH6P52701 AC087499.2-201ENST00000432861 149 ntBASIC4.22□□□□□ -1.73
MSH6P52701 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.22□□□□□ -1.73
MSH6P52701 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC4.22□□□□□ -1.73
MSH6P52701 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.22□□□□□ -1.73
MSH6P52701 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC4.22□□□□□ -1.73
MSH6P52701 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.22□□□□□ -1.73
MSH6P52701 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC4.22□□□□□ -1.73
MSH6P52701 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
MSH6P52701 AC012213.4-201ENST00000606457 354 ntBASIC4.22□□□□□ -1.73
MSH6P52701 AC046144.1-201ENST00000478559 1853 ntBASIC4.22□□□□□ -1.73
MSH6P52701 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
MSH6P52701 AC096644.4-201ENST00000563417 2912 ntBASIC4.22□□□□□ -1.73
MSH6P52701 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.22□□□□□ -1.73
MSH6P52701 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.21□□□□□ -1.73
MSH6P52701 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
MSH6P52701 ASNSP1-201ENST00000518311 1939 ntBASIC4.21□□□□□ -1.73
MSH6P52701 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
MSH6P52701 RNU6-851P-201ENST00000384565 107 ntBASIC4.21□□□□□ -1.74
MSH6P52701 AC240504.1-201ENST00000395709 845 ntBASIC4.21□□□□□ -1.74
MSH6P52701 HSD52-202ENST00000436225 772 ntTSL 3 BASIC4.21□□□□□ -1.74
MSH6P52701 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.21□□□□□ -1.74
MSH6P52701 CST9LP2-201ENST00000437612 320 ntBASIC4.21□□□□□ -1.74
MSH6P52701 RPS17P11-201ENST00000474297 293 ntBASIC4.21□□□□□ -1.74
MSH6P52701 AC034159.1-201ENST00000513885 583 ntBASIC4.21□□□□□ -1.74
MSH6P52701 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.21□□□□□ -1.74
MSH6P52701 RNU4-29P-201ENST00000515943 174 ntBASIC4.21□□□□□ -1.74
MSH6P52701 RNU6-319P-201ENST00000516025 108 ntBASIC4.21□□□□□ -1.74
MSH6P52701 MTCYBP19-201ENST00000517463 1124 ntBASIC4.21□□□□□ -1.74
MSH6P52701 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.21□□□□□ -1.74
MSH6P52701 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.21□□□□□ -1.74
MSH6P52701 AC007620.3-201ENST00000608131 497 ntBASIC4.21□□□□□ -1.74
MSH6P52701 AC243829.7-201ENST00000633081 225 ntBASIC4.21□□□□□ -1.74
MSH6P52701 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
MSH6P52701 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
MSH6P52701 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.21□□□□□ -1.74
MSH6P52701 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSH6P52701 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
MSH6P52701 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSH6P52701 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSH6P52701 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.2□□□□□ -1.74
MSH6P52701 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSH6P52701 AC009313.2-201ENST00000417893 1941 ntBASIC4.2□□□□□ -1.74
MSH6P52701 RNU4-23P-201ENST00000362839 140 ntBASIC4.2□□□□□ -1.74
MSH6P52701 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.2□□□□□ -1.74
MSH6P52701 RNU6-55P-201ENST00000411092 107 ntBASIC4.2□□□□□ -1.74
MSH6P52701 RNU6-954P-201ENST00000411355 107 ntBASIC4.2□□□□□ -1.74
MSH6P52701 AC009302.1-201ENST00000417147 390 ntBASIC4.2□□□□□ -1.74
MSH6P52701 AC003685.2-201ENST00000422795 395 ntBASIC4.2□□□□□ -1.74
MSH6P52701 AL392003.1-201ENST00000434394 243 ntBASIC4.2□□□□□ -1.74
MSH6P52701 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.2□□□□□ -1.74
MSH6P52701 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.2□□□□□ -1.74
MSH6P52701 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4.2□□□□□ -1.74
MSH6P52701 SNORD109B-201ENST00000458961 67 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms