Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC006362.1-201ENST00000567392 174 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 RN7SL753P-201ENST00000581238 290 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 AC006116.3-201ENST00000592968 361 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.73□□□□□ -1.81
HOXA1P49639 AC022146.1-201ENST00000595307 847 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 AC073544.2-201ENST00000601155 540 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 AC005191.1-201ENST00000603950 358 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 AC064872.1-201ENST00000604823 1072 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 AC106028.5-201ENST00000610332 395 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 AC007497.1-201ENST00000610421 561 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXA1P49639 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.73□□□□□ -1.81
HOXA1P49639 AC000123.2-201ENST00000623124 461 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA1P49639 AC090582.1-201ENST00000636321 199 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA1P49639 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA1P49639 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXA1P49639 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
HOXA1P49639 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
HOXA1P49639 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXA1P49639 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXA1P49639 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXA1P49639 XPOTP1-201ENST00000443317 2398 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA1P49639 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA1P49639 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA1P49639 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA1P49639 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
HOXA1P49639 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXA1P49639 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA1P49639 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
HOXA1P49639 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA1P49639 RNU6-777P-201ENST00000364265 104 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 RNA5SP88-201ENST00000365560 109 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA1P49639 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA1P49639 MIR323B-201ENST00000385269 82 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
HOXA1P49639 FABP12P1-201ENST00000401911 322 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AL121972.1-201ENST00000402023 252 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXA1P49639 RN7SKP142-201ENST00000411236 328 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 RN7SKP273-201ENST00000411392 314 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 RPS15AP38-201ENST00000413110 372 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXA1P49639 AL953862.1-201ENST00000423016 168 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AL049610.1-201ENST00000423374 372 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AC073335.1-201ENST00000427776 363 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXA1P49639 AL627308.1-201ENST00000435693 821 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AL353706.1-201ENST00000436728 494 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 TRIM60P18-201ENST00000441518 828 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
HOXA1P49639 H2AFZP5-201ENST00000446960 382 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXA1P49639 RPL26P28-201ENST00000451325 435 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA1P49639 AL445669.2-201ENST00000454425 421 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXA1P49639 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC3.72□□□□□ -1.81
HOXA1P49639 AC109486.1-201ENST00000486833 374 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA1P49639 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA1P49639 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA1P49639 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXA1P49639 AC110792.2-201ENST00000510278 224 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC3.72□□□□□ -1.81
HOXA1P49639 RNU6-1231P-201ENST00000517185 103 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXA1P49639 NARSP2-201ENST00000518524 679 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AC008802.1-201ENST00000519121 791 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXA1P49639 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXA1P49639 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA1P49639 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA1P49639 AC024909.2-201ENST00000553035 286 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AL133457.1-201ENST00000564251 987 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 MTCYBP28-201ENST00000566728 1132 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AC012213.3-201ENST00000577199 777 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 MIR3691-201ENST00000578066 90 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXA1P49639 MIR1269B-201ENST00000580405 75 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA1P49639 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA1P49639 AC012557.2-201ENST00000605919 418 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AC113194.1-201ENST00000606037 500 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA1P49639 AC107214.2-201ENST00000608204 634 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA1P49639 AL359535.1-201ENST00000612100 1087 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 AC243773.3-201ENST00000613270 256 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA1P49639 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXA1P49639 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.72□□□□□ -1.81
HOXA1P49639 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA1P49639 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC3.72□□□□□ -1.81
HOXA1P49639 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA1P49639 PABPC1P9-201ENST00000426076 1612 ntBASIC3.72□□□□□ -1.81
HOXA1P49639 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms