Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC5.84□□□□□ -1.47
MSX1P28360 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSX1P28360 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.84□□□□□ -1.47
MSX1P28360 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
MSX1P28360 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSX1P28360 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSX1P28360 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSX1P28360 AC103710.2-202ENST00000641454 2853 ntBASIC5.84□□□□□ -1.47
MSX1P28360 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
MSX1P28360 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.84□□□□□ -1.47
MSX1P28360 RNU6-960P-201ENST00000364056 120 ntBASIC5.84□□□□□ -1.47
MSX1P28360 RNA5SP478-201ENST00000364657 115 ntBASIC5.84□□□□□ -1.47
MSX1P28360 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.84□□□□□ -1.47
MSX1P28360 MIR137-201ENST00000385223 102 ntBASIC5.84□□□□□ -1.47
MSX1P28360 MT-TW-201ENST00000387382 68 ntBASIC5.84□□□□□ -1.47
MSX1P28360 RPL21P50-201ENST00000417698 477 ntBASIC5.84□□□□□ -1.47
MSX1P28360 CALM2P2-201ENST00000428512 440 ntBASIC5.84□□□□□ -1.47
MSX1P28360 RPL23AP69-201ENST00000431134 458 ntBASIC5.84□□□□□ -1.47
MSX1P28360 AC108479.1-201ENST00000431142 427 ntBASIC5.84□□□□□ -1.47
MSX1P28360 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC5.84□□□□□ -1.47
MSX1P28360 MTND5P15-201ENST00000434246 349 ntBASIC5.84□□□□□ -1.47
MSX1P28360 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.84□□□□□ -1.47
MSX1P28360 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX1P28360 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX1P28360 AC073910.1-201ENST00000445047 438 ntBASIC5.84□□□□□ -1.47
MSX1P28360 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
MSX1P28360 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX1P28360 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC5.84□□□□□ -1.47
MSX1P28360 AC094085.1-201ENST00000468914 584 ntBASIC5.84□□□□□ -1.47
MSX1P28360 DEFB109F-201ENST00000491870 277 ntBASIC5.84□□□□□ -1.47
MSX1P28360 AC010343.2-201ENST00000510162 224 ntBASIC5.84□□□□□ -1.47
MSX1P28360 MTND1P19-201ENST00000511780 315 ntBASIC5.84□□□□□ -1.47
MSX1P28360 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX1P28360 IGHV4-55-201ENST00000520889 368 ntBASIC5.84□□□□□ -1.47
MSX1P28360 TRIM77BP-201ENST00000524985 1119 ntBASIC5.84□□□□□ -1.47
MSX1P28360 DYNLL1P4-201ENST00000549314 266 ntBASIC5.84□□□□□ -1.47
MSX1P28360 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC5.84□□□□□ -1.47
MSX1P28360 AL133153.1-201ENST00000557756 303 ntBASIC5.84□□□□□ -1.47
MSX1P28360 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX1P28360 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX1P28360 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.84□□□□□ -1.47
MSX1P28360 MIR4504-201ENST00000577413 92 ntBASIC5.84□□□□□ -1.47
MSX1P28360 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.84□□□□□ -1.47
MSX1P28360 AC233702.7-202ENST00000582941 211 ntBASIC5.84□□□□□ -1.47
MSX1P28360 AC005899.2-201ENST00000584353 90 ntBASIC5.84□□□□□ -1.47
MSX1P28360 AC012443.1-201ENST00000605605 231 ntBASIC5.84□□□□□ -1.47
MSX1P28360 AC145423.1-201ENST00000605712 336 ntBASIC5.84□□□□□ -1.47
MSX1P28360 MIR6862-1-201ENST00000613016 70 ntBASIC5.84□□□□□ -1.47
MSX1P28360 MIR6862-2-201ENST00000614755 70 ntBASIC5.84□□□□□ -1.47
MSX1P28360 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
MSX1P28360 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
MSX1P28360 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.84□□□□□ -1.47
MSX1P28360 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
MSX1P28360 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC5.84□□□□□ -1.47
MSX1P28360 AC007342.5-201ENST00000571340 2142 ntBASIC5.84□□□□□ -1.47
MSX1P28360 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
MSX1P28360 SOCS5P3-201ENST00000425115 1576 ntBASIC5.84□□□□□ -1.48
MSX1P28360 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.84□□□□□ -1.48
MSX1P28360 ZNF734P-201ENST00000419494 1534 ntBASIC5.84□□□□□ -1.48
MSX1P28360 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.48
MSX1P28360 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
MSX1P28360 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC5.84□□□□□ -1.48
MSX1P28360 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC5.84□□□□□ -1.48
MSX1P28360 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
MSX1P28360 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSX1P28360 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.83□□□□□ -1.48
MSX1P28360 IARS-213ENST00000627121 4587 ntTSL 5 BASIC5.83□□□□□ -1.48
MSX1P28360 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSX1P28360 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX1P28360 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX1P28360 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
MSX1P28360 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX1P28360 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX1P28360 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSX1P28360 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
MSX1P28360 Y_RNA.14-201ENST00000362415 103 ntBASIC5.83□□□□□ -1.48
MSX1P28360 TINAG-202ENST00000370864 692 ntTSL 2 BASIC5.83□□□□□ -1.48
MSX1P28360 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.83□□□□□ -1.48
MSX1P28360 RNU6-1226P-201ENST00000384317 107 ntBASIC5.83□□□□□ -1.48
MSX1P28360 DBIP1-201ENST00000401435 260 ntBASIC5.83□□□□□ -1.48
MSX1P28360 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.83□□□□□ -1.48
MSX1P28360 RPL7P37-201ENST00000425095 738 ntBASIC5.83□□□□□ -1.48
MSX1P28360 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC5.83□□□□□ -1.48
MSX1P28360 RPL21P91-201ENST00000429231 479 ntBASIC5.83□□□□□ -1.48
MSX1P28360 RPL23AP50-201ENST00000434149 455 ntBASIC5.83□□□□□ -1.48
MSX1P28360 AC110602.1-201ENST00000437414 318 ntBASIC5.83□□□□□ -1.48
MSX1P28360 AL590664.1-201ENST00000448065 339 ntBASIC5.83□□□□□ -1.48
MSX1P28360 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.83□□□□□ -1.48
MSX1P28360 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC5.83□□□□□ -1.48
MSX1P28360 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.83□□□□□ -1.48
MSX1P28360 PGAM1P13-201ENST00000507497 754 ntBASIC5.83□□□□□ -1.48
MSX1P28360 AC025465.3-201ENST00000510570 311 ntBASIC5.83□□□□□ -1.48
MSX1P28360 AC108078.2-201ENST00000510750 236 ntBASIC5.83□□□□□ -1.48
MSX1P28360 KHDC1P1-201ENST00000511053 508 ntBASIC5.83□□□□□ -1.48
MSX1P28360 IL7R-208ENST00000511982 612 ntTSL 2 BASIC5.83□□□□□ -1.48
MSX1P28360 AC104057.1-201ENST00000515547 497 ntBASIC5.83□□□□□ -1.48
MSX1P28360 RNA5SP418-201ENST00000515951 117 ntBASIC5.83□□□□□ -1.48
MSX1P28360 SNORA14.1-201ENST00000516113 141 ntBASIC5.83□□□□□ -1.48
MSX1P28360 RNU6-1332P-201ENST00000516666 104 ntBASIC5.83□□□□□ -1.48
MSX1P28360 RNU6-798P-201ENST00000516912 103 ntBASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms