Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.39□□□□□ -1.55
HMGB1P09429 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB1P09429 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB1P09429 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB1P09429 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB1P09429 LINC00622-201ENST00000562811 1570 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 AL672167.1-203ENST00000641299 2975 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
HMGB1P09429 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB1P09429 FRG1BP-201ENST00000278882 761 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 AC021146.4-201ENST00000309229 279 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 SNORA72.3-201ENST00000365074 132 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB1P09429 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB1P09429 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB1P09429 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
HMGB1P09429 RNU2-43P-201ENST00000410306 190 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 RPS15AP38-201ENST00000413110 372 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 AC109780.2-201ENST00000413467 845 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB1P09429 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB1P09429 AL953862.1-201ENST00000423016 168 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 AL049745.1-201ENST00000433953 286 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC5.39□□□□□ -1.55
HMGB1P09429 MTCYBP31-201ENST00000438855 1122 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 THAP5P1-201ENST00000439089 262 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 MTCYBP34-201ENST00000439552 670 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 RPL31P50-201ENST00000471002 296 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 AC012181.1-201ENST00000479895 423 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 IGLV2-34-201ENST00000490007 283 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 AC105233.1-201ENST00000498840 781 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 THAP6-203ENST00000502620 582 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB1P09429 VN1R104P-201ENST00000505115 1009 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC5.39□□□□□ -1.55
HMGB1P09429 AC093281.2-201ENST00000510153 597 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB1P09429 AC090151.1-201ENST00000520784 730 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC5.39□□□□□ -1.55
HMGB1P09429 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB1P09429 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB1P09429 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB1P09429 KPNA2P3-201ENST00000584190 848 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB1P09429 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC5.39□□□□□ -1.55
HMGB1P09429 AC006254.3-201ENST00000603353 884 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 AL357080.1-201ENST00000617394 239 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.39□□□□□ -1.55
HMGB1P09429 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB1P09429 AP000776.1-201ENST00000530032 1663 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC5.39□□□□□ -1.55
HMGB1P09429 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.39□□□□□ -1.55
HMGB1P09429 AC006971.1-201ENST00000407916 4486 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB1P09429 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
HMGB1P09429 AC011266.1-201ENST00000624119 3569 ntBASIC5.39□□□□□ -1.55
HMGB1P09429 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
HMGB1P09429 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HMGB1P09429 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
HMGB1P09429 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC5.38□□□□□ -1.55
HMGB1P09429 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC5.38□□□□□ -1.55
HMGB1P09429 UBE2D3P2-201ENST00000424409 445 ntBASIC5.38□□□□□ -1.55
HMGB1P09429 AL360081.1-201ENST00000428299 555 ntBASIC5.38□□□□□ -1.55
HMGB1P09429 BMS1P19-201ENST00000433925 393 ntBASIC5.38□□□□□ -1.55
HMGB1P09429 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC5.38□□□□□ -1.55
HMGB1P09429 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC5.38□□□□□ -1.55
HMGB1P09429 AL162591.2-201ENST00000449634 317 ntBASIC5.38□□□□□ -1.55
HMGB1P09429 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.38□□□□□ -1.55
HMGB1P09429 AC010326.1-201ENST00000462726 602 ntBASIC5.38□□□□□ -1.55
HMGB1P09429 RN7SL610P-201ENST00000463845 291 ntBASIC5.38□□□□□ -1.55
HMGB1P09429 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
HMGB1P09429 AC017037.2-201ENST00000513850 890 ntBASIC5.38□□□□□ -1.55
HMGB1P09429 RNU6-311P-201ENST00000516224 102 ntBASIC5.38□□□□□ -1.55
HMGB1P09429 C1GALT1P3-201ENST00000522049 819 ntBASIC5.38□□□□□ -1.55
HMGB1P09429 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
HMGB1P09429 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HMGB1P09429 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.38□□□□□ -1.55
HMGB1P09429 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC5.38□□□□□ -1.55
HMGB1P09429 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.38□□□□□ -1.55
HMGB1P09429 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC5.38□□□□□ -1.55
HMGB1P09429 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.38□□□□□ -1.55
HMGB1P09429 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC5.38□□□□□ -1.55
HMGB1P09429 AC013444.2-201ENST00000603317 787 ntBASIC5.38□□□□□ -1.55
HMGB1P09429 AC007349.4-201ENST00000608114 532 ntBASIC5.38□□□□□ -1.55
HMGB1P09429 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.38□□□□□ -1.55
HMGB1P09429 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.38□□□□□ -1.55
HMGB1P09429 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC5.38□□□□□ -1.55
HMGB1P09429 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.38□□□□□ -1.55
HMGB1P09429 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
HMGB1P09429 CPHL1P-201ENST00000461341 3407 ntBASIC5.38□□□□□ -1.55
HMGB1P09429 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.38□□□□□ -1.55
HMGB1P09429 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
HMGB1P09429 THUMPD3P1-201ENST00000506556 1480 ntBASIC5.38□□□□□ -1.55
HMGB1P09429 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
HMGB1P09429 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
HMGB1P09429 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HMGB1P09429 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HMGB1P09429 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HMGB1P09429 RNU1-20P-201ENST00000363314 162 ntBASIC5.37□□□□□ -1.55
HMGB1P09429 SNORA58B-201ENST00000364259 136 ntBASIC5.37□□□□□ -1.55
HMGB1P09429 RNA5SP151-201ENST00000365632 117 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms