Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXA3O43365 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXA3O43365 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXA3O43365 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXA3O43365 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXA3O43365 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXA3O43365 AL163952.1-202ENST00000569625 600 ntBASIC4.45□□□□□ -1.7
HOXA3O43365 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXA3O43365 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
HOXA3O43365 KC877982.1-201ENST00000602313 470 ntBASIC4.45□□□□□ -1.7
HOXA3O43365 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXA3O43365 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXA3O43365 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXA3O43365 OR6R2P-201ENST00000609216 300 ntBASIC4.45□□□□□ -1.7
HOXA3O43365 AC118658.2-201ENST00000618697 459 ntBASIC4.45□□□□□ -1.7
HOXA3O43365 AL159972.1-201ENST00000625150 448 ntBASIC4.45□□□□□ -1.7
HOXA3O43365 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXA3O43365 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXA3O43365 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXA3O43365 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXA3O43365 AC138907.8-201ENST00000623981 2256 ntBASIC4.45□□□□□ -1.7
HOXA3O43365 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXA3O43365 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXA3O43365 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXA3O43365 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.45□□□□□ -1.7
HOXA3O43365 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXA3O43365 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXA3O43365 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXA3O43365 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
HOXA3O43365 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC4.45□□□□□ -1.7
HOXA3O43365 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
HOXA3O43365 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXA3O43365 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXA3O43365 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC4.45□□□□□ -1.7
HOXA3O43365 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXA3O43365 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXA3O43365 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
HOXA3O43365 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.44□□□□□ -1.7
HOXA3O43365 AC009902.3-201ENST00000606235 2172 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXA3O43365 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
HOXA3O43365 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
HOXA3O43365 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
HOXA3O43365 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
HOXA3O43365 RNA5SP335-201ENST00000363817 110 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.44□□□□□ -1.7
HOXA3O43365 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
HOXA3O43365 RNA5SP91-201ENST00000390902 119 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 AL591416.1-201ENST00000404015 867 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 AL009179.1-201ENST00000406085 265 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 AL354719.1-201ENST00000406535 843 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC4.44□□□□□ -1.7
HOXA3O43365 AC004987.3-201ENST00000413879 771 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXA3O43365 PDCL2P1-201ENST00000419302 352 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 AL358176.3-201ENST00000420757 454 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 RPL36AP53-201ENST00000432891 316 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXA3O43365 AC127537.2-201ENST00000439258 465 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXA3O43365 RPS18P6-201ENST00000476880 458 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXA3O43365 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXA3O43365 GAPDHP56-201ENST00000506031 988 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXA3O43365 AC021146.1-201ENST00000511202 716 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 Y_RNA.701-201ENST00000516812 110 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 IGHVIII-76-1-201ENST00000523776 286 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXA3O43365 AC243972.3-201ENST00000539655 198 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC4.44□□□□□ -1.7
HOXA3O43365 AC126177.5-201ENST00000549599 178 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 HMGN2P6-201ENST00000551091 273 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 AC006115.2-201ENST00000596823 202 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 VN1R80P-201ENST00000597126 338 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 AP001429.1-201ENST00000602568 530 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 AL133481.2-203ENST00000607558 139 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXA3O43365 AC233309.1-201ENST00000619522 751 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
HOXA3O43365 AC100810.6-201ENST00000638068 285 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 AC144833.1-201ENST00000567953 4089 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 AC006210.2-201ENST00000367074 1545 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 AL157700.1-201ENST00000561973 1432 ntBASIC4.44□□□□□ -1.7
HOXA3O43365 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
HOXA3O43365 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA3O43365 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms