Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ACTR3P3-201ENST00000480448 893 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 RNU1-45P-201ENST00000517191 141 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 PAICSP4-201ENST00000517543 1253 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 MTCO1P40-201ENST00000574371 625 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 AC006270.2-201ENST00000578523 652 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 BPTFP1-201ENST00000579209 492 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 AC022069.1-201ENST00000582910 658 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 AC007566.2-201ENST00000603642 413 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 BRDTP1-201ENST00000605735 677 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 HMGN2P28-201ENST00000606102 262 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 AC078880.5-201ENST00000617845 421 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 AL356863.1-201ENST00000623378 1080 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 AC068620.4-201ENST00000636730 1182 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS35Q96QK1 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS35Q96QK1 USP8P1-201ENST00000494673 3183 ntBASIC3.66□□□□□ -1.82
VPS35Q96QK1 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS35Q96QK1 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS35Q96QK1 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS35Q96QK1 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS35Q96QK1 PABPC1P7-201ENST00000413177 1513 ntBASIC3.65□□□□□ -1.82
VPS35Q96QK1 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
VPS35Q96QK1 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 RNU1-18P-201ENST00000363062 164 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
VPS35Q96QK1 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 RNU6-468P-201ENST00000384003 109 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 RPL7P60-201ENST00000397636 735 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 OR51A3P-201ENST00000413596 924 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 RPS3AP9-201ENST00000417027 792 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 HMGB3P20-201ENST00000417997 600 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 AC005517.2-201ENST00000424673 553 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VPS35Q96QK1 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 CFTRP1-201ENST00000456646 183 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 NAP1L1P3-201ENST00000462291 880 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 AC004801.2-202ENST00000463559 283 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 AC010307.1-201ENST00000467206 836 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 HMGN1P11-201ENST00000508668 303 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 RANP9-201ENST00000519957 271 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 MED28P5-201ENST00000528254 438 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
VPS35Q96QK1 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 AL133457.1-201ENST00000564251 987 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 AC034105.4-201ENST00000568304 277 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 AL020997.3-201ENST00000602843 359 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 AC006254.3-201ENST00000603353 884 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 AC009948.4-201ENST00000604692 675 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 HSPE1P14-201ENST00000605812 302 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 AC039056.2-201ENST00000622261 511 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 AL161637.1-201ENST00000622380 412 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 AC093875.1-201ENST00000623688 504 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 U6.98-201ENST00000637157 84 ntBASIC3.65□□□□□ -1.83
VPS35Q96QK1 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.65□□□□□ -1.83
VPS35Q96QK1 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS35Q96QK1 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS35Q96QK1 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS35Q96QK1 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS35Q96QK1 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VPS35Q96QK1 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS35Q96QK1 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 RNA5SP124-201ENST00000362739 110 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 RNA5SP167-201ENST00000365461 116 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS35Q96QK1 U6.112-201ENST00000384129 70 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 ATP5F1P4-201ENST00000397288 746 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 RPL21P17-201ENST00000397467 475 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 HSPE1P8-201ENST00000406997 288 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 ATP5A1P2-201ENST00000412323 255 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 RPL31P2-201ENST00000413849 377 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 RPL21P109-201ENST00000422213 475 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.64□□□□□ -1.83
VPS35Q96QK1 AL050341.1-201ENST00000447743 313 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 RPS3AP46-201ENST00000448352 682 ntBASIC3.64□□□□□ -1.83
VPS35Q96QK1 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms