Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 RNVU1-3-201ENST00000364313 161 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS39Q96JC1 DEFB109C-201ENST00000382575 264 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 DEFB109B-201ENST00000382656 264 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 RNU1-13P-201ENST00000384499 162 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 MIR649-201ENST00000384843 97 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 Z98941.1-201ENST00000407764 100 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 TCEA1P2-201ENST00000420496 906 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 AC002542.1-201ENST00000440683 193 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 SETD6P1-201ENST00000444575 317 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 HSFY6P-201ENST00000445573 403 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 NECAP1P2-201ENST00000455668 727 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 AL136097.1-201ENST00000456945 913 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 AC015908.1-201ENST00000478739 476 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 FTH1P21-201ENST00000512179 511 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 AC108064.1-201ENST00000513791 460 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 RNU6-416P-201ENST00000516265 103 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 SNORA26.10-201ENST00000516427 141 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 AC022695.1-201ENST00000522089 237 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS39Q96JC1 AC113192.3-201ENST00000529152 742 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 AC090079.2-201ENST00000575289 768 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 AL606490.9-201ENST00000603331 271 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 BNIP3P19-201ENST00000605397 577 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 AP000720.1-201ENST00000625091 483 ntBASIC3.75□□□□□ -1.81
VPS39Q96JC1 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
VPS39Q96JC1 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS39Q96JC1 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS39Q96JC1 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
VPS39Q96JC1 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
VPS39Q96JC1 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS39Q96JC1 SPRR2C-201ENST00000290702 219 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS39Q96JC1 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS39Q96JC1 RNA5SP424-201ENST00000390988 115 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 TRIM60P5Y-201ENST00000413946 574 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 RAD23BP2-201ENST00000416003 1207 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS39Q96JC1 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.74□□□□□ -1.81
VPS39Q96JC1 AC006548.1-201ENST00000427470 102 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 MRPS18BP2-201ENST00000434310 759 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 B3GNT2P1-201ENST00000434960 952 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS39Q96JC1 MTCYBP31-201ENST00000438855 1122 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS39Q96JC1 RPS27AP1-201ENST00000475545 471 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 OR5H5P-201ENST00000503164 928 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS39Q96JC1 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS39Q96JC1 RNA5SP468-201ENST00000516782 93 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.74□□□□□ -1.81
VPS39Q96JC1 HMGB1P1-201ENST00000522557 636 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 AC008489.1-201ENST00000524271 483 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 AP000916.1-201ENST00000533869 835 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS39Q96JC1 AL121576.1-201ENST00000556055 276 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 BPTFP1-201ENST00000579209 492 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 MIR5047-201ENST00000579212 100 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS39Q96JC1 AC084824.5-201ENST00000612009 413 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
VPS39Q96JC1 MIR6810-201ENST00000622701 70 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 CR381572.1-201ENST00000625098 102 ntBASIC3.74□□□□□ -1.81
VPS39Q96JC1 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS39Q96JC1 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
VPS39Q96JC1 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS39Q96JC1 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS39Q96JC1 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
VPS39Q96JC1 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS39Q96JC1 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS39Q96JC1 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS39Q96JC1 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS39Q96JC1 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS39Q96JC1 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS39Q96JC1 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 RNU6-213P-201ENST00000384051 104 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 RNU6-761P-201ENST00000384148 107 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS39Q96JC1 AL391417.1-201ENST00000404100 426 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 SNORA3.3-201ENST00000408712 125 ntBASIC3.73□□□□□ -1.81
VPS39Q96JC1 MTCO3P12-201ENST00000416718 547 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 272.2 ms