Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 VN1R92P-201ENST00000598511 928 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC068790.5-201ENST00000602741 355 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AL020997.3-201ENST00000602843 359 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC005776.1-201ENST00000603164 290 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 ELOCP35-201ENST00000604289 336 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC068722.2-201ENST00000618734 544 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC018816.2-201ENST00000621460 353 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AL773545.4-201ENST00000637262 310 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AL513478.4-201ENST00000641636 310 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AL133383.2-201ENST00000622958 2336 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 U1.1-201ENST00000384101 164 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 U6.112-201ENST00000384129 70 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 RNU6-932P-201ENST00000391108 106 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 AL035423.1-201ENST00000420331 213 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 MTCO2P1-201ENST00000424648 477 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 AC083863.1-201ENST00000438811 231 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 HMGB1P37-201ENST00000439613 609 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 CCNB1IP1P3-201ENST00000454702 829 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 SNRPGP3-201ENST00000469405 227 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 AC022695.1-201ENST00000522089 237 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 MTCO1P40-201ENST00000574371 625 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 AC133794.1-201ENST00000602731 914 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 AP005229.2-201ENST00000609980 697 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 AP000255.1-201ENST00000610276 676 ntBASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.89□□□□□ -1.79
HDDC3Q8N4P3 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 RNU6-921P-201ENST00000384361 107 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 MIR649-201ENST00000384843 97 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 MIR183-201ENST00000384958 110 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 NDUFB4P4-201ENST00000404822 243 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 RNU4-78P-201ENST00000410940 126 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 OFD1P18Y-201ENST00000420889 959 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AL591419.1-201ENST00000427423 339 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AL158053.1-201ENST00000441503 453 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 ELOCP13-201ENST00000443934 329 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 RPL7P59-201ENST00000447700 943 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 CYCSP35-201ENST00000451978 304 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 UBE2CP3-201ENST00000502715 450 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AC139783.2-201ENST00000504847 1145 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 RN7SKP18-201ENST00000516005 275 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 RN7SKP244-201ENST00000516513 307 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 SCARNA14-201ENST00000516903 136 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 GNRHR2P1-201ENST00000555315 631 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms