Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
NUP54Q7Z3B4 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.94□□□□□ -1.78
NUP54Q7Z3B4 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
NUP54Q7Z3B4 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
NUP54Q7Z3B4 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 OR6C69P-201ENST00000394268 893 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AL160275.2-201ENST00000412010 394 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AL161631.1-201ENST00000417933 486 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AC092634.6-201ENST00000418558 192 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 MFSD13B-201ENST00000420133 1290 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 MRPS36P1-201ENST00000421291 307 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 C4BPAP2-201ENST00000428434 478 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AC005345.1-201ENST00000431868 217 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 TRIM60P9Y-201ENST00000438459 816 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 TRIM60P11Y-201ENST00000445313 801 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 RFC5P1-201ENST00000454419 874 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 TRBV26-201ENST00000456572 344 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AC079804.1-201ENST00000461922 436 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AC109327.1-201ENST00000471666 403 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 UQCRHP4-201ENST00000471686 272 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AC108734.3-201ENST00000481241 1165 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 RN7SL691P-201ENST00000494487 301 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 UBE2CP3-201ENST00000502715 450 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AC008958.1-201ENST00000511047 682 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 RN7SKP265-201ENST00000516448 223 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 RN7SKP244-201ENST00000516513 307 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 MYL12AP1-201ENST00000518490 515 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AP000790.1-201ENST00000528891 737 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 TVP23BP1-201ENST00000557500 617 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 MIR378J-201ENST00000611988 109 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 MLECP1-201ENST00000615893 709 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AC006338.2-201ENST00000616864 791 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AC006386.1-201ENST00000619436 415 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 MIR7702-201ENST00000621931 59 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AL365440.1-201ENST00000436135 2167 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 AC004925.1-201ENST00000624256 2706 ntBASIC3.93□□□□□ -1.78
NUP54Q7Z3B4 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 RNA5SP295-201ENST00000362655 121 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 RNU6-1242P-201ENST00000391052 103 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AL023807.1-201ENST00000407932 359 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 RNA5SP36-201ENST00000410197 133 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 LUZP4P1-201ENST00000415420 344 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 MTCO3P12-201ENST00000416718 547 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 COX6CP17-201ENST00000421389 185 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AC006548.1-201ENST00000427470 102 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 USP9YP31-201ENST00000431405 881 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AL356276.2-201ENST00000435919 558 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 CFTRP1-201ENST00000456646 183 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 RPL7P1-201ENST00000468161 747 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AC105137.1-201ENST00000484355 562 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 KLRA1P-201ENST00000503499 986 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 MTCO2P32-201ENST00000514865 403 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AC027309.2-201ENST00000520566 192 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AC091515.1-201ENST00000548110 679 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 MTND4P33-201ENST00000556706 766 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 GTF2IP8-201ENST00000560687 584 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AC025588.3-201ENST00000604182 274 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AL031666.3-201ENST00000609320 1006 ntBASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.92□□□□□ -1.78
NUP54Q7Z3B4 AC005962.2-201ENST00000611427 652 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms