Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5□□□□□ -1.61
USP39Q53GS9 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
USP39Q53GS9 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5□□□□□ -1.61
USP39Q53GS9 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5□□□□□ -1.61
USP39Q53GS9 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
USP39Q53GS9 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5□□□□□ -1.61
USP39Q53GS9 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5□□□□□ -1.61
USP39Q53GS9 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5□□□□□ -1.61
USP39Q53GS9 AP000756.2-201ENST00000624168 2567 ntBASIC5□□□□□ -1.61
USP39Q53GS9 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
USP39Q53GS9 AC126755.2-208ENST00000327792 462 ntBASIC5□□□□□ -1.61
USP39Q53GS9 AC138969.1-213ENST00000331436 462 ntBASIC5□□□□□ -1.61
USP39Q53GS9 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC5□□□□□ -1.61
USP39Q53GS9 Y_RNA.89-201ENST00000363031 102 ntBASIC5□□□□□ -1.61
USP39Q53GS9 RNU4-73P-201ENST00000363164 141 ntBASIC5□□□□□ -1.61
USP39Q53GS9 SNORA2.3-201ENST00000383920 135 ntBASIC5□□□□□ -1.61
USP39Q53GS9 RNU4-31P-201ENST00000384211 141 ntBASIC5□□□□□ -1.61
USP39Q53GS9 MIR525-201ENST00000384978 85 ntBASIC5□□□□□ -1.61
USP39Q53GS9 RNU6-244P-201ENST00000391028 104 ntBASIC5□□□□□ -1.61
USP39Q53GS9 RPL31P1-201ENST00000398116 372 ntBASIC5□□□□□ -1.61
USP39Q53GS9 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
USP39Q53GS9 SNORA11-201ENST00000408789 128 ntBASIC5□□□□□ -1.61
USP39Q53GS9 AC092745.2-202ENST00000411880 369 ntBASIC5□□□□□ -1.61
USP39Q53GS9 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC5□□□□□ -1.61
USP39Q53GS9 USP9YP13-201ENST00000417797 480 ntBASIC5□□□□□ -1.61
USP39Q53GS9 BX510359.2-201ENST00000417920 305 ntBASIC5□□□□□ -1.61
USP39Q53GS9 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC5□□□□□ -1.61
USP39Q53GS9 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5□□□□□ -1.61
USP39Q53GS9 AC093698.1-201ENST00000423843 571 ntBASIC5□□□□□ -1.61
USP39Q53GS9 Z93242.1-201ENST00000427102 353 ntBASIC5□□□□□ -1.61
USP39Q53GS9 RPS26P47-201ENST00000427219 348 ntBASIC5□□□□□ -1.61
USP39Q53GS9 AC008850.1-201ENST00000427546 362 ntBASIC5□□□□□ -1.61
USP39Q53GS9 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC5□□□□□ -1.61
USP39Q53GS9 NRBF2P3-201ENST00000432731 865 ntBASIC5□□□□□ -1.61
USP39Q53GS9 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5□□□□□ -1.61
USP39Q53GS9 AL353093.1-201ENST00000441292 436 ntBASIC5□□□□□ -1.61
USP39Q53GS9 CYCSP24-201ENST00000445119 316 ntBASIC5□□□□□ -1.61
USP39Q53GS9 RPL39P6-201ENST00000448289 150 ntBASIC5□□□□□ -1.61
USP39Q53GS9 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC5□□□□□ -1.61
USP39Q53GS9 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5□□□□□ -1.61
USP39Q53GS9 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC5□□□□□ -1.61
USP39Q53GS9 RPS20P24-201ENST00000457473 361 ntBASIC5□□□□□ -1.61
USP39Q53GS9 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5□□□□□ -1.61
USP39Q53GS9 RPL7P38-201ENST00000488396 739 ntBASIC5□□□□□ -1.61
USP39Q53GS9 AK3P4-201ENST00000504283 583 ntBASIC5□□□□□ -1.61
USP39Q53GS9 AC009646.1-201ENST00000510455 318 ntBASIC5□□□□□ -1.61
USP39Q53GS9 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC5□□□□□ -1.61
USP39Q53GS9 RNU6-430P-201ENST00000517078 107 ntBASIC5□□□□□ -1.61
USP39Q53GS9 PAICSP4-201ENST00000517543 1253 ntBASIC5□□□□□ -1.61
USP39Q53GS9 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC5□□□□□ -1.61
USP39Q53GS9 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5□□□□□ -1.61
USP39Q53GS9 ASB8-204ENST00000536071 568 ntTSL 4 BASIC5□□□□□ -1.61
USP39Q53GS9 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC5□□□□□ -1.61
USP39Q53GS9 AP001004.1-201ENST00000582468 324 ntBASIC5□□□□□ -1.61
USP39Q53GS9 BNIP3P11-201ENST00000603878 563 ntBASIC5□□□□□ -1.61
USP39Q53GS9 AL139286.1-201ENST00000604465 483 ntBASIC5□□□□□ -1.61
USP39Q53GS9 AC008277.2-201ENST00000605196 797 ntBASIC5□□□□□ -1.61
USP39Q53GS9 AP005432.2-201ENST00000608162 586 ntBASIC5□□□□□ -1.61
USP39Q53GS9 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5□□□□□ -1.61
USP39Q53GS9 AC090017.1-201ENST00000548612 1779 ntBASIC5□□□□□ -1.61
USP39Q53GS9 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5□□□□□ -1.61
USP39Q53GS9 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5□□□□□ -1.61
USP39Q53GS9 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5□□□□□ -1.61
USP39Q53GS9 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
USP39Q53GS9 AL451142.2-201ENST00000429076 2090 ntBASIC5□□□□□ -1.61
USP39Q53GS9 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.99□□□□□ -1.61
USP39Q53GS9 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP39Q53GS9 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
USP39Q53GS9 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP39Q53GS9 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP39Q53GS9 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP39Q53GS9 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP39Q53GS9 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP39Q53GS9 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
USP39Q53GS9 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
USP39Q53GS9 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 Y_RNA.295-201ENST00000364918 102 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.99□□□□□ -1.61
USP39Q53GS9 EIF4A1P3-201ENST00000411521 244 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 AL590806.1-201ENST00000415818 853 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 AC009238.2-201ENST00000431026 355 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 BX323845.1-201ENST00000432417 179 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC4.99□□□□□ -1.61
USP39Q53GS9 AL033528.1-201ENST00000453780 140 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.99□□□□□ -1.61
USP39Q53GS9 AURKAPS2-201ENST00000454983 333 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 AC091180.1-201ENST00000462104 372 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.99□□□□□ -1.61
USP39Q53GS9 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.99□□□□□ -1.61
USP39Q53GS9 SETP14-201ENST00000497538 873 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.99□□□□□ -1.61
USP39Q53GS9 OR5M7P-201ENST00000526140 972 ntBASIC4.99□□□□□ -1.61
USP39Q53GS9 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms