Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RPL7P11-201ENST00000437586 658 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 AC105402.2-201ENST00000438503 358 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA1P49639 CNOT7P2-201ENST00000441051 832 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 CEACAMP7-201ENST00000444105 496 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 VN1R10P-201ENST00000447106 875 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA1P49639 RPS4XP15-201ENST00000489210 795 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXA1P49639 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXA1P49639 AC006499.3-201ENST00000506077 748 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 MTCO3P7-201ENST00000510008 774 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA1P49639 RNU6-150P-201ENST00000516237 95 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 Y_RNA.695-201ENST00000516715 107 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXA1P49639 AC137768.1-201ENST00000549998 553 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC3.74□□□□□ -1.81
HOXA1P49639 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXA1P49639 AC012414.6-201ENST00000568241 401 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA1P49639 AC209154.1-201ENST00000582156 337 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA1P49639 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA1P49639 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.74□□□□□ -1.81
HOXA1P49639 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXA1P49639 AC083899.3-201ENST00000603413 594 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 AC239868.4-201ENST00000608318 671 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 AC123768.4-201ENST00000616244 701 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA1P49639 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
HOXA1P49639 AC231657.1-201ENST00000624313 397 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 AL442639.1-201ENST00000625030 1899 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 LINC01739-205ENST00000641890 573 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 AP001486.2-201ENST00000561652 5113 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
HOXA1P49639 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA1P49639 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXA1P49639 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXA1P49639 ZFRP1-201ENST00000457579 2970 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 ZNF37BP-203ENST00000452306 1352 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXA1P49639 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA1P49639 AC117529.2-201ENST00000512159 2068 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXA1P49639 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA1P49639 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA1P49639 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA1P49639 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA1P49639 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA1P49639 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXA1P49639 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA1P49639 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA1P49639 RNA5SP305-201ENST00000362665 119 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 SNORA51.1-201ENST00000363243 140 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 RNA5SP22-201ENST00000365393 109 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA1P49639 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
HOXA1P49639 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA1P49639 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA1P49639 Z98745.1-201ENST00000402553 494 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA1P49639 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA1P49639 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA1P49639 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA1P49639 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.73□□□□□ -1.81
HOXA1P49639 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXA1P49639 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.73□□□□□ -1.81
HOXA1P49639 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXA1P49639 AC092427.1-201ENST00000439177 601 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA1P49639 MTND2P20-201ENST00000440805 661 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 MTND1P30-201ENST00000441241 901 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 AC073648.4-201ENST00000442655 781 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 MTCO1P19-201ENST00000443487 500 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 AC112498.1-201ENST00000444401 332 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA1P49639 MTCO1P48-201ENST00000448024 1096 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 RPL36AP33-201ENST00000450395 310 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 snoU13.20-201ENST00000459180 104 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 snoU13.7-201ENST00000459220 104 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 PPIAP21-201ENST00000464473 501 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 OR52A4P-201ENST00000472867 958 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 AC087385.1-201ENST00000475062 312 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA1P49639 RN7SL808P-201ENST00000496066 299 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC3.73□□□□□ -1.81
HOXA1P49639 MTATP6P22-201ENST00000507369 598 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA1P49639 AC022447.1-201ENST00000515358 464 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 IGKV2-23-201ENST00000518729 323 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 LECT2-205ENST00000522943 574 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA1P49639 DEFB131D-201ENST00000526803 184 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA1P49639 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA1P49639 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA1P49639 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA1P49639 EDDM3DP-201ENST00000554692 434 ntBASIC3.73□□□□□ -1.81
HOXA1P49639 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms