Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL18A1P39060 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL18A1P39060 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.7□□□□□ -1.82
COL18A1P39060 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL18A1P39060 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL18A1P39060 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL18A1P39060 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
COL18A1P39060 MIR196B-201ENST00000384852 84 ntBASIC3.69□□□□□ -1.82
COL18A1P39060 RN7SKP58-201ENST00000411010 305 ntBASIC3.69□□□□□ -1.82
COL18A1P39060 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC3.69□□□□□ -1.82
COL18A1P39060 RPL23AP4-201ENST00000427757 463 ntBASIC3.69□□□□□ -1.82
COL18A1P39060 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.69□□□□□ -1.82
COL18A1P39060 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
COL18A1P39060 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC3.69□□□□□ -1.82
COL18A1P39060 AC078817.1-201ENST00000492623 435 ntBASIC3.69□□□□□ -1.82
COL18A1P39060 AC008549.1-201ENST00000512900 643 ntBASIC3.69□□□□□ -1.82
COL18A1P39060 RNA5SP282-201ENST00000516355 108 ntBASIC3.69□□□□□ -1.82
COL18A1P39060 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC3.69□□□□□ -1.82
COL18A1P39060 AL355493.4-201ENST00000618530 292 ntBASIC3.69□□□□□ -1.82
COL18A1P39060 AC064859.1-201ENST00000624741 174 ntBASIC3.69□□□□□ -1.82
COL18A1P39060 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC3.69□□□□□ -1.82
COL18A1P39060 AC012020.1-201ENST00000624541 1728 ntBASIC3.69□□□□□ -1.82
COL18A1P39060 Z98941.1-201ENST00000407764 100 ntBASIC3.68□□□□□ -1.82
COL18A1P39060 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.68□□□□□ -1.82
COL18A1P39060 snoU13.26-201ENST00000459452 105 ntBASIC3.68□□□□□ -1.82
COL18A1P39060 AC005351.1-201ENST00000511152 786 ntBASIC3.68□□□□□ -1.82
COL18A1P39060 AC009313.2-201ENST00000417893 1941 ntBASIC3.68□□□□□ -1.82
COL18A1P39060 AC245100.2-201ENST00000454544 1679 ntBASIC3.68□□□□□ -1.82
COL18A1P39060 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC3.68□□□□□ -1.82
COL18A1P39060 U3.11-201ENST00000364476 212 ntBASIC3.68□□□□□ -1.82
COL18A1P39060 SKINT1L-201ENST00000401057 817 ntBASIC3.68□□□□□ -1.82
COL18A1P39060 RNA5SP508-201ENST00000411327 119 ntBASIC3.68□□□□□ -1.82
COL18A1P39060 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.68□□□□□ -1.82
COL18A1P39060 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.68□□□□□ -1.82
COL18A1P39060 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC3.68□□□□□ -1.82
COL18A1P39060 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL18A1P39060 FTH1P6-201ENST00000430768 320 ntBASIC3.68□□□□□ -1.82
COL18A1P39060 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL18A1P39060 IGKV2D-23-201ENST00000518179 286 ntBASIC3.68□□□□□ -1.82
COL18A1P39060 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.68□□□□□ -1.82
COL18A1P39060 ATP5F1P7-201ENST00000567330 760 ntBASIC3.68□□□□□ -1.82
COL18A1P39060 AL161912.3-201ENST00000605404 628 ntBASIC3.68□□□□□ -1.82
COL18A1P39060 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.68□□□□□ -1.82
COL18A1P39060 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.67□□□□□ -1.82
COL18A1P39060 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.67□□□□□ -1.82
COL18A1P39060 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL18A1P39060 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL18A1P39060 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL18A1P39060 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL18A1P39060 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL18A1P39060 MIR504-201ENST00000385065 83 ntBASIC3.67□□□□□ -1.82
COL18A1P39060 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.67□□□□□ -1.82
COL18A1P39060 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL18A1P39060 OR2AS1P-201ENST00000427827 319 ntBASIC3.67□□□□□ -1.82
COL18A1P39060 RNA5SP24-201ENST00000516478 95 ntBASIC3.67□□□□□ -1.82
COL18A1P39060 OR10D4P-201ENST00000525892 951 ntBASIC3.67□□□□□ -1.82
COL18A1P39060 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL18A1P39060 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL18A1P39060 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.67□□□□□ -1.82
COL18A1P39060 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.67□□□□□ -1.82
COL18A1P39060 RMST_9.1-201ENST00000619945 193 ntBASIC3.67□□□□□ -1.82
COL18A1P39060 AC006111.3-201ENST00000622137 383 ntBASIC3.67□□□□□ -1.82
COL18A1P39060 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL18A1P39060 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.67□□□□□ -1.82
COL18A1P39060 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
COL18A1P39060 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.66□□□□□ -1.82
COL18A1P39060 RNU1-35P-201ENST00000362782 153 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL18A1P39060 MIR887-201ENST00000401258 79 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 PTP4A1P1-201ENST00000420539 515 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 AL034379.1-201ENST00000423216 253 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 MTND5P23-201ENST00000430812 1655 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.66□□□□□ -1.82
COL18A1P39060 SRIP1-201ENST00000489235 288 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 RNA5SP148-201ENST00000516527 94 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 MIR2114-201ENST00000516645 80 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC3.66□□□□□ -1.82
COL18A1P39060 AP003122.3-201ENST00000526316 255 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC3.66□□□□□ -1.82
COL18A1P39060 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC3.66□□□□□ -1.82
COL18A1P39060 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL18A1P39060 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC3.66□□□□□ -1.82
COL18A1P39060 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.66□□□□□ -1.82
COL18A1P39060 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
COL18A1P39060 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL18A1P39060 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
COL18A1P39060 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.66□□□□□ -1.82
COL18A1P39060 CR382285.2-201ENST00000624662 1495 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 U3.6-201ENST00000363622 211 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 MIR137-201ENST00000385223 102 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 RNA5SP296-201ENST00000410523 111 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC3.66□□□□□ -1.82
COL18A1P39060 RPS26P40-201ENST00000435209 294 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 snoU13.15-201ENST00000459407 104 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.66□□□□□ -1.82
COL18A1P39060 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.66□□□□□ -1.82
COL18A1P39060 ZNF658B-202ENST00000615961 3375 ntBASIC3.66□□□□□ -1.82
COL18A1P39060 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.65□□□□□ -1.82
COL18A1P39060 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
COL18A1P39060 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms