Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSX2P35548 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSX2P35548 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.83□□□□□ -1.64
MSX2P35548 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.83□□□□□ -1.64
MSX2P35548 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.83□□□□□ -1.64
MSX2P35548 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSX2P35548 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSX2P35548 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSX2P35548 AC134882.1-201ENST00000603738 1676 ntBASIC4.83□□□□□ -1.64
MSX2P35548 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSX2P35548 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSX2P35548 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSX2P35548 LINC01355-201ENST00000566551 5444 ntBASIC4.83□□□□□ -1.64
MSX2P35548 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSX2P35548 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSX2P35548 MTCO1P11-201ENST00000429111 1528 ntBASIC4.82□□□□□ -1.64
MSX2P35548 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSX2P35548 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSX2P35548 CASC19-221ENST00000641309 1382 ntBASIC4.82□□□□□ -1.64
MSX2P35548 SMG1P6-201ENST00000532337 2930 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AL118496.1-201ENST00000440201 1812 ntBASIC4.82□□□□□ -1.64
MSX2P35548 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSX2P35548 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSX2P35548 OR52B3P-201ENST00000314715 928 ntBASIC4.82□□□□□ -1.64
MSX2P35548 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSX2P35548 SNORD56.2-201ENST00000363242 71 ntBASIC4.82□□□□□ -1.64
MSX2P35548 SNORA68.2-201ENST00000391263 128 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AL031985.1-201ENST00000392713 418 ntBASIC4.82□□□□□ -1.64
MSX2P35548 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSX2P35548 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX2P35548 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.82□□□□□ -1.64
MSX2P35548 SPA17P1-201ENST00000416656 452 ntBASIC4.82□□□□□ -1.64
MSX2P35548 USP9YP20-201ENST00000419224 558 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX2P35548 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX2P35548 FABP7P1-201ENST00000424004 391 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC4.82□□□□□ -1.64
MSX2P35548 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX2P35548 FCF1P1-201ENST00000432690 571 ntBASIC4.82□□□□□ -1.64
MSX2P35548 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.82□□□□□ -1.64
MSX2P35548 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.82□□□□□ -1.64
MSX2P35548 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX2P35548 ACTR3P2-201ENST00000439585 1257 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AL031584.1-201ENST00000447169 754 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX2P35548 RAD23BP3-201ENST00000454157 1152 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.82□□□□□ -1.64
MSX2P35548 AC011476.1-201ENST00000466725 307 ntBASIC4.82□□□□□ -1.64
MSX2P35548 RN7SL174P-201ENST00000475578 289 ntBASIC4.82□□□□□ -1.64
MSX2P35548 MTND1P3-201ENST00000484956 952 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AC111000.3-201ENST00000508057 576 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX2P35548 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX2P35548 AC060775.1-201ENST00000518241 520 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX2P35548 AP005639.2-201ENST00000527592 928 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AP000790.1-201ENST00000528891 737 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AP003034.1-201ENST00000534621 422 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.82□□□□□ -1.64
MSX2P35548 AC090502.2-201ENST00000549267 280 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AL049872.1-201ENST00000556323 322 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AL359212.1-201ENST00000556608 614 ntBASIC4.82□□□□□ -1.64
MSX2P35548 RPS3AP23-202ENST00000574601 686 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC4.82□□□□□ -1.64
MSX2P35548 MTCO3P13-201ENST00000577757 781 ntBASIC4.82□□□□□ -1.64
MSX2P35548 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX2P35548 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX2P35548 AC055876.5-201ENST00000605667 259 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC4.82□□□□□ -1.64
MSX2P35548 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.82□□□□□ -1.64
MSX2P35548 VPS8-228ENST00000628962 207 ntTSL 5 BASIC4.82□□□□□ -1.64
MSX2P35548 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.82□□□□□ -1.64
MSX2P35548 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
MSX2P35548 USP9YP4-201ENST00000424401 1745 ntBASIC4.82□□□□□ -1.64
MSX2P35548 LINC01963-201ENST00000562038 3148 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AL451142.2-201ENST00000429076 2090 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.82□□□□□ -1.64
MSX2P35548 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSX2P35548 AC025125.1-201ENST00000624743 1922 ntBASIC4.82□□□□□ -1.64
MSX2P35548 AC092747.4-201ENST00000620519 1861 ntBASIC4.81□□□□□ -1.64
MSX2P35548 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.81□□□□□ -1.64
MSX2P35548 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
MSX2P35548 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
MSX2P35548 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.81□□□□□ -1.64
MSX2P35548 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSX2P35548 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
MSX2P35548 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
MSX2P35548 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSX2P35548 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
MSX2P35548 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
MSX2P35548 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
MSX2P35548 RNU6-908P-201ENST00000410160 94 ntBASIC4.81□□□□□ -1.64
MSX2P35548 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX2P35548 AL590609.2-201ENST00000421430 368 ntBASIC4.81□□□□□ -1.64
MSX2P35548 AC233981.1-201ENST00000423224 461 ntBASIC4.81□□□□□ -1.64
MSX2P35548 AL513185.2-201ENST00000425543 193 ntBASIC4.81□□□□□ -1.64
MSX2P35548 AL589872.1-201ENST00000426602 288 ntBASIC4.81□□□□□ -1.64
MSX2P35548 ARPC3P1-201ENST00000437218 533 ntBASIC4.81□□□□□ -1.64
MSX2P35548 RPS29P10-201ENST00000439197 166 ntBASIC4.81□□□□□ -1.64
MSX2P35548 RPL31P15-201ENST00000449770 338 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 129.6 ms