Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 RNA5SP374-201ENST00000362939 125 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA9P31269 RNU6-356P-201ENST00000384140 107 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 HMGN1P24-201ENST00000412282 298 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 AC004987.3-201ENST00000413879 771 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 AC127526.1-201ENST00000417526 366 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 FAR1P1-201ENST00000427163 934 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 MTND4LP14-201ENST00000429447 288 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXA9P31269 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA9P31269 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA9P31269 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA9P31269 RPL27AP5-201ENST00000469428 449 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 AC093770.1-201ENST00000511559 571 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 APOOP4-201ENST00000513530 597 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA9P31269 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA9P31269 OR5D17P-201ENST00000531492 978 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 AC026333.2-201ENST00000542164 106 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.55□□□□□ -1.84
HOXA9P31269 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA9P31269 CYP2C60P-201ENST00000566088 139 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA9P31269 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXA9P31269 AC040174.2-201ENST00000602701 465 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 AP003117.1-201ENST00000602771 554 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 AP004372.1-201ENST00000604842 844 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 AL034351.1-201ENST00000605288 668 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 AC124312.4-201ENST00000605533 310 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 AL513477.2-201ENST00000607858 568 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 CR589904.2-201ENST00000612533 440 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 AL354976.1-201ENST00000613843 387 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 XIST_intron.1-201ENST00000619444 68 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA9P31269 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HOXA9P31269 OR6C71P-202ENST00000641886 1107 ntBASIC3.55□□□□□ -1.84
HOXA9P31269 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA9P31269 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA9P31269 AL035425.3-201ENST00000564206 4996 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA9P31269 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA9P31269 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA9P31269 SNORA31-201ENST00000362607 130 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA9P31269 AL357075.1-201ENST00000404107 726 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 AC069218.2-201ENST00000411665 344 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 AL024507.1-201ENST00000412741 274 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA9P31269 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA9P31269 AC008065.1-201ENST00000428525 348 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXA9P31269 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA9P31269 ELOCP11-201ENST00000436690 332 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 CBX1P4-201ENST00000439415 457 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 ELOCP16-201ENST00000444494 332 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXA9P31269 SNORA59A-201ENST00000459326 152 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 AP001992.1-205ENST00000462248 379 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 NFU1-207ENST00000462320 558 ntTSL 4 BASIC3.54□□□□□ -1.84
HOXA9P31269 RPL6P9-201ENST00000466502 859 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 RN7SL330P-201ENST00000469709 307 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA9P31269 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.54□□□□□ -1.84
HOXA9P31269 AC109925.1-201ENST00000478069 331 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 MTCO1P31-201ENST00000506355 492 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXA9P31269 AP003168.1-201ENST00000530091 307 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXA9P31269 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXA9P31269 AC004024.1-201ENST00000549244 247 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXA9P31269 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.54□□□□□ -1.84
HOXA9P31269 MTCO3P22-201ENST00000603219 784 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 AC242628.1-201ENST00000606810 391 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 AC135803.1-201ENST00000608748 565 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA9P31269 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA9P31269 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXA9P31269 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA9P31269 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA9P31269 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA9P31269 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXA9P31269 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXA9P31269 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.54□□□□□ -1.84
HOXA9P31269 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.53□□□□□ -1.84
HOXA9P31269 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA9P31269 AL353743.1-202ENST00000431724 1695 ntBASIC3.53□□□□□ -1.84
HOXA9P31269 AC091152.2-201ENST00000591628 2569 ntBASIC3.53□□□□□ -1.84
HOXA9P31269 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA9P31269 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HOXA9P31269 RPL23AP57-201ENST00000332361 466 ntBASIC3.53□□□□□ -1.84
HOXA9P31269 RNU6-31P-201ENST00000384388 108 ntBASIC3.53□□□□□ -1.84
HOXA9P31269 Z86062.1-201ENST00000406773 777 ntBASIC3.53□□□□□ -1.84
HOXA9P31269 UBE2V1P15-201ENST00000407776 448 ntBASIC3.53□□□□□ -1.84
HOXA9P31269 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.53□□□□□ -1.84
HOXA9P31269 RPL26P37-201ENST00000411983 438 ntBASIC3.53□□□□□ -1.84
HOXA9P31269 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC3.53□□□□□ -1.84
HOXA9P31269 RANP4-201ENST00000413361 655 ntBASIC3.53□□□□□ -1.84
HOXA9P31269 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms