Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC234772.1-201ENST00000377927 937 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 AC009237.5-201ENST00000414271 501 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.78□□□□□ -1.8
PTPN4P29074 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.78□□□□□ -1.8
PTPN4P29074 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PTPN4P29074 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.78□□□□□ -1.8
PTPN4P29074 MOB1AP1-201ENST00000430903 535 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 TBCAP1-201ENST00000436520 327 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.78□□□□□ -1.8
PTPN4P29074 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.78□□□□□ -1.8
PTPN4P29074 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.78□□□□□ -1.8
PTPN4P29074 OR51B8P-201ENST00000449892 769 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.78□□□□□ -1.8
PTPN4P29074 OR9M1P-201ENST00000459641 921 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 RPL7L1P8-201ENST00000469911 741 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 AP000893.1-201ENST00000474462 794 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.78□□□□□ -1.8
PTPN4P29074 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.78□□□□□ -1.8
PTPN4P29074 HIGD1AP6-201ENST00000521833 279 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.78□□□□□ -1.8
PTPN4P29074 AF279873.1-201ENST00000523393 313 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.78□□□□□ -1.8
PTPN4P29074 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC3.78□□□□□ -1.8
PTPN4P29074 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.78□□□□□ -1.8
PTPN4P29074 MTCYBP28-201ENST00000566728 1132 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.78□□□□□ -1.8
PTPN4P29074 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.78□□□□□ -1.8
PTPN4P29074 BPTFP1-201ENST00000579209 492 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 AC022069.1-201ENST00000582910 658 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 YWHAQP7-201ENST00000603536 658 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.78□□□□□ -1.8
PTPN4P29074 AL590396.4-201ENST00000636779 956 ntBASIC3.78□□□□□ -1.8
PTPN4P29074 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PTPN4P29074 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PTPN4P29074 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.78□□□□□ -1.8
PTPN4P29074 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PTPN4P29074 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.78□□□□□ -1.81
PTPN4P29074 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PTPN4P29074 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
PTPN4P29074 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.77□□□□□ -1.81
PTPN4P29074 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PTPN4P29074 AL136520.1-201ENST00000600311 1322 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
PTPN4P29074 AC016716.1-201ENST00000265882 708 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 RNU6-1243P-201ENST00000364028 107 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 SNORA7.2-201ENST00000364446 145 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 SNORA51.2-201ENST00000364595 132 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 U6.112-201ENST00000384129 70 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 RNU6-207P-201ENST00000384137 107 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 AL035405.1-201ENST00000400795 710 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 AL121972.1-201ENST00000402023 252 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.77□□□□□ -1.81
PTPN4P29074 TRIM60P5Y-201ENST00000413946 574 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PTPN4P29074 AC246680.2-201ENST00000422106 389 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 AL009174.1-201ENST00000426577 416 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PTPN4P29074 HIGD1AP4-201ENST00000430194 280 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.77□□□□□ -1.81
PTPN4P29074 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC3.77□□□□□ -1.81
PTPN4P29074 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.77□□□□□ -1.81
PTPN4P29074 RPS11P1-201ENST00000451072 473 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 ANP32BP2-201ENST00000454525 545 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 MTND2P39-201ENST00000457230 764 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 CEACAMP4-201ENST00000457676 421 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.77□□□□□ -1.81
PTPN4P29074 RPL7P15-201ENST00000461190 712 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 AC026414.1-201ENST00000504046 698 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PTPN4P29074 MTND3P3-201ENST00000505004 126 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.77□□□□□ -1.81
PTPN4P29074 AC112198.4-201ENST00000515450 351 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 HIGD1AP3-201ENST00000515857 278 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 PAICSP4-201ENST00000517543 1253 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 AP003355.1-201ENST00000518956 587 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 AC008489.1-201ENST00000524271 483 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 OR8K4P-201ENST00000534608 872 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC3.77□□□□□ -1.81
PTPN4P29074 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.77□□□□□ -1.81
PTPN4P29074 CYCSP30-201ENST00000546447 172 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.77□□□□□ -1.81
PTPN4P29074 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.77□□□□□ -1.81
PTPN4P29074 MIR4789-201ENST00000577469 82 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.77□□□□□ -1.81
PTPN4P29074 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.77□□□□□ -1.81
PTPN4P29074 DNAJC19P3-201ENST00000594491 331 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 AC008739.3-201ENST00000603262 127 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 AC009948.4-201ENST00000604692 675 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 IGHV3-29-201ENST00000604817 344 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
PTPN4P29074 AP001486.2-201ENST00000561652 5113 ntBASIC3.77□□□□□ -1.81
PTPN4P29074 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.77□□□□□ -1.81
PTPN4P29074 GABPAP-201ENST00000419271 1356 ntBASIC3.76□□□□□ -1.81
PTPN4P29074 ELL2P4-201ENST00000446870 1376 ntBASIC3.76□□□□□ -1.81
PTPN4P29074 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.76□□□□□ -1.81
PTPN4P29074 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
PTPN4P29074 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
PTPN4P29074 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms