Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC010857.1-201ENST00000606398 594 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC5.07□□□□□ -1.6
SMARCA1P28370 AC106028.5-201ENST00000610332 395 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 AC140479.6-201ENST00000633535 357 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 AC090582.1-201ENST00000636321 199 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.07□□□□□ -1.6
SMARCA1P28370 AC025125.1-201ENST00000624743 1922 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC5.07□□□□□ -1.6
SMARCA1P28370 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.07□□□□□ -1.6
SMARCA1P28370 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.07□□□□□ -1.6
SMARCA1P28370 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
SMARCA1P28370 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
SMARCA1P28370 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
SMARCA1P28370 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SMARCA1P28370 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
SMARCA1P28370 Z73965.1-201ENST00000623412 2297 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.06□□□□□ -1.6
SMARCA1P28370 OR10J6P-201ENST00000289731 930 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 RNU6-374P-201ENST00000364146 108 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 RNU6-660P-201ENST00000364566 109 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 CUBN-201ENST00000377823 705 ntTSL 3 BASIC5.06□□□□□ -1.6
SMARCA1P28370 RNU6-657P-201ENST00000383904 107 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AL031779.1-201ENST00000415663 330 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AC008280.1-201ENST00000418851 412 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AC006366.1-201ENST00000422002 759 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AC004448.2-201ENST00000422360 586 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC5.06□□□□□ -1.6
SMARCA1P28370 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC5.06□□□□□ -1.6
SMARCA1P28370 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.06□□□□□ -1.6
SMARCA1P28370 OFD1P12Y-201ENST00000427963 1207 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC5.06□□□□□ -1.6
SMARCA1P28370 KCTD10P1-201ENST00000434203 625 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC5.06□□□□□ -1.6
SMARCA1P28370 MTND1P30-201ENST00000441241 901 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 TRIM60P18-201ENST00000441518 828 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC5.06□□□□□ -1.6
SMARCA1P28370 RN7SL303P-201ENST00000469773 251 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.06□□□□□ -1.6
SMARCA1P28370 AC013828.1-201ENST00000481845 158 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AHI1-208ENST00000488690 712 ntTSL 5 BASIC5.06□□□□□ -1.6
SMARCA1P28370 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 MTCO2P32-201ENST00000514865 403 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 RN7SKP82-201ENST00000516786 223 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC5.06□□□□□ -1.6
SMARCA1P28370 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
SMARCA1P28370 ASB8-204ENST00000536071 568 ntTSL 4 BASIC5.06□□□□□ -1.6
SMARCA1P28370 AC090502.2-201ENST00000549267 280 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC5.06□□□□□ -1.6
SMARCA1P28370 PSMB7P1-201ENST00000556349 514 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AC012414.6-201ENST00000568241 401 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 SNORD39.3-201ENST00000584451 71 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AC008507.1-201ENST00000587506 734 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.06□□□□□ -1.6
SMARCA1P28370 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC5.06□□□□□ -1.6
SMARCA1P28370 U73023.1-201ENST00000603134 700 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 TEX41-238ENST00000604253 709 ntTSL 5 BASIC5.06□□□□□ -1.6
SMARCA1P28370 AL031775.1-201ENST00000607014 887 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AL359535.1-201ENST00000612100 1087 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AL021997.2-201ENST00000615674 271 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AL023881.1-201ENST00000621088 301 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 AC092184.1-201ENST00000625042 715 ntBASIC5.06□□□□□ -1.6
SMARCA1P28370 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
SMARCA1P28370 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.06□□□□□ -1.6
SMARCA1P28370 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
SMARCA1P28370 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.06□□□□□ -1.6
SMARCA1P28370 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC5.06□□□□□ -1.6
SMARCA1P28370 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
SMARCA1P28370 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SMARCA1P28370 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SMARCA1P28370 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.05□□□□□ -1.6
SMARCA1P28370 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SMARCA1P28370 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.05□□□□□ -1.6
SMARCA1P28370 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
SMARCA1P28370 CGA-201ENST00000369582 729 ntTSL 5 BASIC5.05□□□□□ -1.6
SMARCA1P28370 RNU6-444P-201ENST00000383988 108 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 MIR506-201ENST00000384998 124 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC5.05□□□□□ -1.6
SMARCA1P28370 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SMARCA1P28370 RPL23AP39-201ENST00000415533 405 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 MED14P1-201ENST00000430517 648 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 AC016712.1-201ENST00000431088 378 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC5.05□□□□□ -1.6
SMARCA1P28370 USP9YP28-201ENST00000435142 589 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 LARP1BP3-201ENST00000437229 869 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC5.05□□□□□ -1.6
SMARCA1P28370 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC5.05□□□□□ -1.6
SMARCA1P28370 RN7SL860P-201ENST00000473738 223 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 AC012158.1-204ENST00000483430 465 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC5.05□□□□□ -1.6
SMARCA1P28370 HMGB1P21-201ENST00000502313 581 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC5.05□□□□□ -1.6
SMARCA1P28370 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.05□□□□□ -1.6
SMARCA1P28370 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC5.05□□□□□ -1.6
SMARCA1P28370 AC110792.2-201ENST00000510278 224 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 AC093840.1-201ENST00000511599 336 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 AC022447.1-201ENST00000515358 464 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 RNU6-583P-201ENST00000516012 92 ntBASIC5.05□□□□□ -1.6
SMARCA1P28370 RNA5SP73-201ENST00000516744 108 ntBASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms