Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ASNSP3-201ENST00000451989 1306 ntBASIC3.52□□□□□ -1.85
COL5A3P25940 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
COL5A3P25940 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
COL5A3P25940 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
COL5A3P25940 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL5A3P25940 RNA5SP68-201ENST00000363885 119 ntBASIC3.52□□□□□ -1.85
COL5A3P25940 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL5A3P25940 RPS12P23-201ENST00000419579 400 ntBASIC3.52□□□□□ -1.85
COL5A3P25940 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC3.52□□□□□ -1.85
COL5A3P25940 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.52□□□□□ -1.85
COL5A3P25940 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.52□□□□□ -1.85
COL5A3P25940 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC3.52□□□□□ -1.85
COL5A3P25940 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC3.52□□□□□ -1.85
COL5A3P25940 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.52□□□□□ -1.85
COL5A3P25940 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.52□□□□□ -1.85
COL5A3P25940 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
COL5A3P25940 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC3.52□□□□□ -1.85
COL5A3P25940 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL5A3P25940 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.51□□□□□ -1.85
COL5A3P25940 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL5A3P25940 RNA5SP502-201ENST00000362694 119 ntBASIC3.51□□□□□ -1.85
COL5A3P25940 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL5A3P25940 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.51□□□□□ -1.85
COL5A3P25940 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.51□□□□□ -1.85
COL5A3P25940 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC3.51□□□□□ -1.85
COL5A3P25940 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL5A3P25940 AC243972.3-201ENST00000539655 198 ntBASIC3.51□□□□□ -1.85
COL5A3P25940 AL365503.1-201ENST00000605247 905 ntBASIC3.51□□□□□ -1.85
COL5A3P25940 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL5A3P25940 SKINT1L-201ENST00000401057 817 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 RNA5SP293-201ENST00000410527 113 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 OR2AS1P-201ENST00000427827 319 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.5□□□□□ -1.85
COL5A3P25940 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.5□□□□□ -1.85
COL5A3P25940 AL513124.1-201ENST00000450410 614 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.5□□□□□ -1.85
COL5A3P25940 MIR2114-201ENST00000516645 80 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.5□□□□□ -1.85
COL5A3P25940 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.5□□□□□ -1.85
COL5A3P25940 AL592295.2-201ENST00000612578 206 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 AL355493.4-201ENST00000618530 292 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.5□□□□□ -1.85
COL5A3P25940 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.5□□□□□ -1.85
COL5A3P25940 TAB3P1-202ENST00000452645 1634 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 RPL23AP48-201ENST00000406913 488 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 RPL23AP22-201ENST00000437556 453 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 RN7SL633P-201ENST00000488974 297 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 AC008549.1-201ENST00000512900 643 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 RNA5SP320-201ENST00000516263 124 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 ZNF658B-202ENST00000615961 3375 ntBASIC3.5□□□□□ -1.85
COL5A3P25940 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.5□□□□□ -1.85
COL5A3P25940 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
COL5A3P25940 AC093775.1-201ENST00000624154 1868 ntBASIC3.49□□□□□ -1.85
COL5A3P25940 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
COL5A3P25940 RNU1-35P-201ENST00000362782 153 ntBASIC3.49□□□□□ -1.85
COL5A3P25940 LAP3P1-201ENST00000403648 294 ntBASIC3.49□□□□□ -1.85
COL5A3P25940 RNA5SP274-201ENST00000410484 108 ntBASIC3.49□□□□□ -1.85
COL5A3P25940 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A3P25940 NPM1P11-201ENST00000417106 855 ntBASIC3.49□□□□□ -1.85
COL5A3P25940 MTCO1P51-201ENST00000427672 1060 ntBASIC3.49□□□□□ -1.85
COL5A3P25940 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.49□□□□□ -1.85
COL5A3P25940 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.49□□□□□ -1.85
COL5A3P25940 RNA5SP24-201ENST00000516478 95 ntBASIC3.49□□□□□ -1.85
COL5A3P25940 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.49□□□□□ -1.85
COL5A3P25940 AC090281.1-201ENST00000523019 276 ntBASIC3.49□□□□□ -1.85
COL5A3P25940 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.49□□□□□ -1.85
COL5A3P25940 AC015911.5-201ENST00000587076 451 ntBASIC3.49□□□□□ -1.85
COL5A3P25940 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.49□□□□□ -1.85
COL5A3P25940 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A3P25940 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
COL5A3P25940 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL5A3P25940 SPATA2P1-201ENST00000431223 2055 ntBASIC3.48□□□□□ -1.85
COL5A3P25940 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.48□□□□□ -1.85
COL5A3P25940 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL5A3P25940 AC245054.2-201ENST00000415639 319 ntBASIC3.48□□□□□ -1.85
COL5A3P25940 AL365396.1-201ENST00000430854 671 ntBASIC3.48□□□□□ -1.85
COL5A3P25940 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.48□□□□□ -1.85
COL5A3P25940 NECAP1P2-201ENST00000455668 727 ntBASIC3.48□□□□□ -1.85
COL5A3P25940 AC112184.1-201ENST00000505179 312 ntBASIC3.48□□□□□ -1.85
COL5A3P25940 ANXA2P1-201ENST00000505539 926 ntBASIC3.48□□□□□ -1.85
COL5A3P25940 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC3.48□□□□□ -1.85
COL5A3P25940 SNORA64.4-201ENST00000516632 81 ntBASIC3.48□□□□□ -1.85
COL5A3P25940 IGKV2D-23-201ENST00000518179 286 ntBASIC3.48□□□□□ -1.85
COL5A3P25940 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC3.48□□□□□ -1.85
COL5A3P25940 AP000916.1-201ENST00000533869 835 ntBASIC3.48□□□□□ -1.85
COL5A3P25940 AL358913.1-201ENST00000554342 121 ntBASIC3.48□□□□□ -1.85
COL5A3P25940 AC112503.1-201ENST00000608436 391 ntBASIC3.48□□□□□ -1.85
COL5A3P25940 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
COL5A3P25940 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
COL5A3P25940 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
COL5A3P25940 U3.6-201ENST00000363622 211 ntBASIC3.47□□□□□ -1.85
COL5A3P25940 RN7SKP223-201ENST00000410582 62 ntBASIC3.47□□□□□ -1.85
COL5A3P25940 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.47□□□□□ -1.85
COL5A3P25940 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.47□□□□□ -1.85
COL5A3P25940 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.47□□□□□ -1.85
COL5A3P25940 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.47□□□□□ -1.85
COL5A3P25940 FGF7P3-201ENST00000454645 303 ntBASIC3.47□□□□□ -1.85
COL5A3P25940 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.47□□□□□ -1.85
COL5A3P25940 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms