Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC109458.1-201ENST00000508858 316 ntBASIC3.69□□□□□ -1.82
SDC3O75056 RNA5SP208-201ENST00000516156 78 ntBASIC3.69□□□□□ -1.82
SDC3O75056 RNA5SP164-201ENST00000516533 110 ntBASIC3.69□□□□□ -1.82
SDC3O75056 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.69□□□□□ -1.82
SDC3O75056 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.69□□□□□ -1.82
SDC3O75056 IGJP1-201ENST00000522682 475 ntBASIC3.69□□□□□ -1.82
SDC3O75056 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.69□□□□□ -1.82
SDC3O75056 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.69□□□□□ -1.82
SDC3O75056 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.69□□□□□ -1.82
SDC3O75056 AC006960.3-201ENST00000561845 705 ntBASIC3.69□□□□□ -1.82
SDC3O75056 AC104072.1-201ENST00000568817 668 ntBASIC3.69□□□□□ -1.82
SDC3O75056 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.69□□□□□ -1.82
SDC3O75056 AC126365.2-201ENST00000580630 379 ntBASIC3.69□□□□□ -1.82
SDC3O75056 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.69□□□□□ -1.82
SDC3O75056 AC007566.2-201ENST00000603642 413 ntBASIC3.69□□□□□ -1.82
SDC3O75056 AC005156.1-201ENST00000613371 573 ntBASIC3.69□□□□□ -1.82
SDC3O75056 AC007275.1-201ENST00000621243 671 ntBASIC3.69□□□□□ -1.82
SDC3O75056 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.69□□□□□ -1.82
SDC3O75056 AC006927.2-201ENST00000639256 389 ntBASIC3.69□□□□□ -1.82
SDC3O75056 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SDC3O75056 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.69□□□□□ -1.82
SDC3O75056 HSPA8P1-201ENST00000425843 1833 ntBASIC3.69□□□□□ -1.82
SDC3O75056 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SDC3O75056 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC3.69□□□□□ -1.82
SDC3O75056 EXOC5P1-201ENST00000510543 1969 ntBASIC3.69□□□□□ -1.82
SDC3O75056 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SDC3O75056 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.69□□□□□ -1.82
SDC3O75056 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SDC3O75056 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SDC3O75056 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SDC3O75056 MTCO1P24-201ENST00000515438 1558 ntBASIC3.68□□□□□ -1.82
SDC3O75056 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
SDC3O75056 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
SDC3O75056 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SDC3O75056 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
SDC3O75056 MIR423-201ENST00000362201 94 ntBASIC3.68□□□□□ -1.82
SDC3O75056 RNA5SP72-201ENST00000364442 117 ntBASIC3.68□□□□□ -1.82
SDC3O75056 SNORA9-201ENST00000384215 133 ntBASIC3.68□□□□□ -1.82
SDC3O75056 RNVU1-14-201ENST00000384770 164 ntBASIC3.68□□□□□ -1.82
SDC3O75056 MIR483-201ENST00000385070 76 ntBASIC3.68□□□□□ -1.82
SDC3O75056 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
SDC3O75056 SOD2P1-201ENST00000396543 562 ntBASIC3.68□□□□□ -1.82
SDC3O75056 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.68□□□□□ -1.82
SDC3O75056 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.68□□□□□ -1.82
SDC3O75056 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.68□□□□□ -1.82
SDC3O75056 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.68□□□□□ -1.82
SDC3O75056 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.68□□□□□ -1.82
SDC3O75056 PAICSP7-201ENST00000419829 962 ntBASIC3.68□□□□□ -1.82
SDC3O75056 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.68□□□□□ -1.82
SDC3O75056 AL009174.1-201ENST00000426577 416 ntBASIC3.68□□□□□ -1.82
SDC3O75056 RAB11AP1-201ENST00000442978 646 ntBASIC3.68□□□□□ -1.82
SDC3O75056 TVP23BP2-201ENST00000455082 615 ntBASIC3.68□□□□□ -1.82
SDC3O75056 AC087879.1-201ENST00000474343 374 ntBASIC3.68□□□□□ -1.82
SDC3O75056 AC078817.1-201ENST00000492623 435 ntBASIC3.68□□□□□ -1.82
SDC3O75056 AC093801.2-201ENST00000503966 1050 ntBASIC3.68□□□□□ -1.82
SDC3O75056 RAC1P2-201ENST00000511164 579 ntBASIC3.68□□□□□ -1.82
SDC3O75056 SNORA70.14-201ENST00000516205 110 ntBASIC3.68□□□□□ -1.82
SDC3O75056 NARSP2-201ENST00000518524 679 ntBASIC3.68□□□□□ -1.82
SDC3O75056 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.68□□□□□ -1.82
SDC3O75056 MTND5P21-201ENST00000531961 522 ntBASIC3.68□□□□□ -1.82
SDC3O75056 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.68□□□□□ -1.82
SDC3O75056 OR5B10P-201ENST00000532869 642 ntBASIC3.68□□□□□ -1.82
SDC3O75056 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SDC3O75056 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.68□□□□□ -1.82
SDC3O75056 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.68□□□□□ -1.82
SDC3O75056 TMF1P1-201ENST00000576058 373 ntBASIC3.68□□□□□ -1.82
SDC3O75056 MIR3908-201ENST00000579798 126 ntBASIC3.68□□□□□ -1.82
SDC3O75056 MIR3200-201ENST00000580767 85 ntBASIC3.68□□□□□ -1.82
SDC3O75056 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.68□□□□□ -1.82
SDC3O75056 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.68□□□□□ -1.82
SDC3O75056 ELOCP35-201ENST00000604289 336 ntBASIC3.68□□□□□ -1.82
SDC3O75056 AC092354.2-201ENST00000607786 514 ntBASIC3.68□□□□□ -1.82
SDC3O75056 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.68□□□□□ -1.82
SDC3O75056 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC3.68□□□□□ -1.82
SDC3O75056 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
SDC3O75056 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SDC3O75056 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SDC3O75056 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
SDC3O75056 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SDC3O75056 SAGE4P-201ENST00000442271 3381 ntBASIC3.67□□□□□ -1.82
SDC3O75056 ELL2P4-201ENST00000446870 1376 ntBASIC3.67□□□□□ -1.82
SDC3O75056 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.67□□□□□ -1.82
SDC3O75056 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SDC3O75056 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SDC3O75056 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
SDC3O75056 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.67□□□□□ -1.82
SDC3O75056 RNU6-549P-201ENST00000384433 107 ntBASIC3.67□□□□□ -1.82
SDC3O75056 RNU6-1151P-201ENST00000384684 107 ntBASIC3.67□□□□□ -1.82
SDC3O75056 RHEBP3-201ENST00000411920 351 ntBASIC3.67□□□□□ -1.82
SDC3O75056 ATP5A1P2-201ENST00000412323 255 ntBASIC3.67□□□□□ -1.82
SDC3O75056 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.67□□□□□ -1.82
SDC3O75056 AC008280.1-201ENST00000418851 412 ntBASIC3.67□□□□□ -1.82
SDC3O75056 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.67□□□□□ -1.82
SDC3O75056 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.67□□□□□ -1.82
SDC3O75056 AL365396.1-201ENST00000430854 671 ntBASIC3.67□□□□□ -1.82
SDC3O75056 AC010881.1-201ENST00000433830 235 ntBASIC3.67□□□□□ -1.82
SDC3O75056 AC073063.1-201ENST00000434352 607 ntBASIC3.67□□□□□ -1.82
SDC3O75056 AL356535.1-201ENST00000440335 398 ntBASIC3.67□□□□□ -1.82
SDC3O75056 RPL7P24-201ENST00000493052 752 ntBASIC3.67□□□□□ -1.82
SDC3O75056 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms