Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC004853.1-201ENST00000604902 698 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 BNIP3P4-201ENST00000604946 565 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AC090948.2-201ENST00000607363 564 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 MIR8069-1-201ENST00000616627 86 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 AP004607.9-201ENST00000618202 316 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 MIR8069-2-201ENST00000621412 86 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 RBPJP2-201ENST00000618187 1444 ntBASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.96□□□□□ -1.46
CCDC39Q9UFE4 FARSBP1-201ENST00000435808 1778 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 LARP1BP1-201ENST00000506036 1359 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 NSRP1P1-201ENST00000444067 1693 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC005294.1-201ENST00000355509 281 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 MIR323A-201ENST00000362199 86 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 RNU6-451P-201ENST00000362921 107 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 Y_RNA.315-201ENST00000365117 102 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 Y_RNA.474-201ENST00000384341 102 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 RN7SKP32-201ENST00000410167 303 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 RN7SKP59-201ENST00000410520 314 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 RNU2-39P-201ENST00000410604 198 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 HMGB1P11-201ENST00000413899 637 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC004690.1-201ENST00000418216 328 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 EIF1P3-201ENST00000423841 334 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AL358176.2-201ENST00000425769 204 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AL161722.2-201ENST00000434731 981 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC236972.2-201ENST00000434979 310 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC009961.2-201ENST00000435771 251 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 GAPDHP58-201ENST00000438477 1006 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC104634.1-201ENST00000452720 462 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 RNU6-420P-201ENST00000458780 107 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC112206.1-201ENST00000468416 477 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC103851.1-201ENST00000506833 274 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC093809.1-201ENST00000509155 340 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 RPL7L1P4-201ENST00000513004 707 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC108064.1-201ENST00000513791 460 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 RNY4P37-201ENST00000516225 96 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 RNU7-30P-201ENST00000516835 62 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 IGJP1-201ENST00000522682 475 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 SNORD95-201ENST00000579879 68 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 MIR4503-201ENST00000582187 83 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC008638.3-201ENST00000603341 463 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AL596327.1-201ENST00000603629 213 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 STMN1P1-201ENST00000617809 440 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC015908.5-201ENST00000623289 343 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC091905.1-201ENST00000624400 311 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC024023.1-201ENST00000624530 922 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC091046.3-201ENST00000631455 1574 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC110994.2-201ENST00000635481 492 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 MTND4P1-201ENST00000457501 1466 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AC100871.1-201ENST00000507871 1456 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 AL118496.1-201ENST00000440201 1812 ntBASIC5.95□□□□□ -1.46
CCDC39Q9UFE4 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 ZNF37BP-203ENST00000452306 1352 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 BRAFP1-201ENST00000445336 2703 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 MIR525-201ENST00000384978 85 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 MIR589-201ENST00000385238 99 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 MIR143-201ENST00000385300 106 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 AC009804.1-201ENST00000400949 179 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 AL356057.3-201ENST00000402607 340 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 RNU2-62P-201ENST00000410868 191 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 OR9R1P-201ENST00000412200 877 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 OR2B7P-201ENST00000429302 934 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 AC022022.1-201ENST00000430304 178 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 MTND6P13-201ENST00000443510 523 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 C1DP4-201ENST00000455429 424 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 SETP20-201ENST00000457046 852 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 RN7SL189P-201ENST00000468631 289 ntBASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC39Q9UFE4 AL136038.1-201ENST00000497246 351 ntBASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms