Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RN7SL585P-201ENST00000470538 280 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 ACTR3P3-201ENST00000480448 893 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC006517.1-201ENST00000480485 328 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 MTCYBP16-201ENST00000509187 1129 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC018797.3-201ENST00000513388 1241 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 RNU7-143P-201ENST00000516781 65 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC023050.2-201ENST00000544968 387 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC091516.1-201ENST00000549191 703 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AL161713.1-201ENST00000555538 145 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 OR6R2P-201ENST00000609216 300 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC063944.3-201ENST00000609969 533 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AL121772.2-201ENST00000614331 297 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC026634.1-201ENST00000634369 198 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 MTND5P28-201ENST00000438005 1594 ntBASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.89□□□□□ -1.79
CCDC3Q9BQI4 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 OR4A15-201ENST00000314706 1035 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 RNU6-582P-201ENST00000362989 107 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 RNU6-251P-201ENST00000363235 104 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 RNA5SP391-201ENST00000363456 119 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 RNU6-115P-201ENST00000364310 107 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 RNU6-444P-201ENST00000383988 108 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 RNU6-413P-201ENST00000384115 107 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 MIR449B-201ENST00000384995 97 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 SNORD65.1-201ENST00000390889 71 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 MTCO3P31-201ENST00000405526 789 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 MIR1251-201ENST00000408552 70 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 SNORA57.3-201ENST00000411095 141 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 HMGB1P49-201ENST00000418882 569 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AC069157.1-201ENST00000421749 137 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AC004022.1-201ENST00000447766 1066 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AL034418.1-201ENST00000448675 860 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 NF1P3-201ENST00000457709 450 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 RPL7P15-201ENST00000461190 712 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 RPL5P24-201ENST00000463742 885 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 RN7SL323P-201ENST00000494712 295 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AC118282.1-201ENST00000506408 765 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 PAICSP4-201ENST00000517543 1253 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 CYCSP30-201ENST00000546447 172 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AC015688.2-201ENST00000584523 262 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AC067852.4-201ENST00000590314 478 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AL390838.2-201ENST00000602394 274 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 FP236240.3-201ENST00000623061 327 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AC004777.1-201ENST00000624317 287 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AC068620.4-201ENST00000636730 1182 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 AP001486.2-201ENST00000561652 5113 ntBASIC3.88□□□□□ -1.79
CCDC3Q9BQI4 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 AC016716.1-201ENST00000265882 708 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RNU6-1066P-201ENST00000363573 105 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RN7SKP44-201ENST00000363602 316 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 RNU6-560P-201ENST00000364007 108 ntBASIC3.87□□□□□ -1.79
CCDC3Q9BQI4 SNORA70.4-201ENST00000365509 134 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms