Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LLPHP1-201ENST00000603571 367 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AL022345.1-201ENST00000607292 135 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 MIR6721-201ENST00000617181 87 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 MIR6715B-201ENST00000637172 77 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 TPTE2P4-201ENST00000258589 1605 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AL353796.1-201ENST00000561542 3241 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AC005224.3-201ENST00000584683 2140 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AC012254.3-201ENST00000591183 2117 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 DNM1P47-203ENST00000571780 12667 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 MAPK10-304ENST00000641341 3984 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 OR10R3P-201ENST00000361688 942 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RNU1-134P-201ENST00000362935 165 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RNU6-1155P-201ENST00000363554 107 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.259-201ENST00000364619 101 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RNA5-8SP5-201ENST00000365304 152 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AL451142.1-201ENST00000375867 775 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RNU6-1013P-201ENST00000384180 107 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RNU6-837P-201ENST00000391056 108 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RNU6-550P-201ENST00000391057 101 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RPS4XP9-201ENST00000405151 780 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RNA5SP111-201ENST00000411386 101 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 OFD1P1Y-201ENST00000411756 1225 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RPL35AP31-201ENST00000418340 337 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 HMGB3P24-201ENST00000433260 622 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AC023141.3-201ENST00000436698 278 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AL138899.2-201ENST00000439139 499 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 TIMM8BP2-201ENST00000445940 251 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 EEF1B2P3-201ENST00000447718 678 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AL162739.1-201ENST00000450606 307 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AC016027.4-201ENST00000450866 277 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AL513533.1-201ENST00000453728 415 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 PPIAP7-201ENST00000454070 489 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RPL21P103-201ENST00000479921 488 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RPL37P23-201ENST00000492641 294 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RN7SL101P-201ENST00000496350 279 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AC108145.1-201ENST00000503770 153 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AC018797.1-201ENST00000510791 255 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 APOBEC3AP1-201ENST00000511396 287 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AP001804.3-201ENST00000525146 880 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AP000620.1-201ENST00000527147 504 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AC107958.1-201ENST00000556576 290 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 FRG2DP-202ENST00000566967 323 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RPL23AP84-201ENST00000571193 464 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 MIR3942-201ENST00000585264 109 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AC008521.1-201ENST00000587471 187 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 Z82243.1-201ENST00000609432 473 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AL133215.3-201ENST00000609801 448 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.812-201ENST00000610788 101 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 PART1_1.1-201ENST00000611761 217 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AL365204.3-201ENST00000612448 685 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.784-201ENST00000613803 101 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AP001486.3-201ENST00000615334 372 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.787-201ENST00000616522 101 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.780-201ENST00000617336 101 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.801-201ENST00000619005 101 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 MIR6130-201ENST00000619419 109 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 FAM27E2-201ENST00000619668 403 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AL357559.1-201ENST00000622228 274 ntBASIC4.7□□□□□ -1.66
CCDC140Q96MF4 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC140Q96MF4 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms