Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 VN1R85P-201ENST00000601587 426 ntBASIC3.32□□□□□ -1.88
CLHC1Q8NHS4 AC018816.2-201ENST00000621460 353 ntBASIC3.32□□□□□ -1.88
CLHC1Q8NHS4 AC119674.1-220ENST00000641502 1048 ntBASIC3.32□□□□□ -1.88
CLHC1Q8NHS4 ZNF37BP-203ENST00000452306 1352 ntBASIC3.32□□□□□ -1.88
CLHC1Q8NHS4 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CLHC1Q8NHS4 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.32□□□□□ -1.88
CLHC1Q8NHS4 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CLHC1Q8NHS4 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 RNA5SP479-201ENST00000364858 117 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 RNU6-98P-201ENST00000384173 107 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 RNU6-55P-201ENST00000411092 107 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 RNU6-954P-201ENST00000411355 107 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 RPL21P40-201ENST00000428586 483 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AL445584.1-201ENST00000431451 330 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 TRIM60P18-201ENST00000441518 828 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 HSPE1P28-201ENST00000443139 211 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 RPL17P49-201ENST00000443728 411 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AC007967.1-201ENST00000455422 1159 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 NFU1-207ENST00000462320 558 ntTSL 4 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AC023598.1-201ENST00000472521 361 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AC016065.2-201ENST00000514530 444 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AC008494.2-201ENST00000514544 370 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 RN7SKP21-201ENST00000516503 220 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 RN7SKP283-201ENST00000517197 270 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 MIMT1-201ENST00000597105 1050 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AL009028.1-201ENST00000604895 802 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AC068831.8-201ENST00000620171 435 ntBASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CLHC1Q8NHS4 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 RN7SKP280-201ENST00000364196 304 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 Z99755.1-201ENST00000414048 380 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 AL512504.1-201ENST00000415494 778 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 RPL7P46-201ENST00000425129 740 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 BX679664.1-201ENST00000434429 253 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 AL606490.8-201ENST00000441624 319 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 RPS4XP2-201ENST00000458402 793 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 AC091179.1-201ENST00000461606 579 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 RPL7P5-201ENST00000471472 736 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 AC126121.1-201ENST00000482313 553 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 AC025459.1-201ENST00000504072 156 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 RNA5SP468-201ENST00000516782 93 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 NTAN1P1-201ENST00000603150 646 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 AC007566.2-201ENST00000603642 413 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 AC010591.1-201ENST00000603941 649 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 AC024023.1-201ENST00000624530 922 ntBASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.3□□□□□ -1.88
CLHC1Q8NHS4 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CLHC1Q8NHS4 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CLHC1Q8NHS4 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms