Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR3200-201ENST00000580767 85 ntBASIC3.92□□□□□ -1.78
HDDC3Q8N4P3 AL390816.3-201ENST00000604527 1066 ntBASIC3.92□□□□□ -1.78
HDDC3Q8N4P3 AL513477.2-201ENST00000607858 568 ntBASIC3.92□□□□□ -1.78
HDDC3Q8N4P3 AC012531.5-201ENST00000611375 151 ntBASIC3.92□□□□□ -1.78
HDDC3Q8N4P3 AL591424.2-201ENST00000617023 128 ntBASIC3.92□□□□□ -1.78
HDDC3Q8N4P3 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HDDC3Q8N4P3 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.92□□□□□ -1.78
HDDC3Q8N4P3 USP8P1-201ENST00000494673 3183 ntBASIC3.92□□□□□ -1.78
HDDC3Q8N4P3 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HDDC3Q8N4P3 MTND5P31-201ENST00000419366 1374 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 RNU6-837P-201ENST00000391056 108 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 PTMAP5-201ENST00000393073 333 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 ATP5F1P4-201ENST00000397288 746 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 HSPE1P26-201ENST00000405341 275 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 UBE2D3P3-201ENST00000426992 425 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 ELOCP18-201ENST00000434209 337 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 ELOCP8-201ENST00000439309 332 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 ELOCP15-201ENST00000442090 332 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 Z99714.1-201ENST00000450463 807 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 CEACAMP4-201ENST00000457676 421 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 RPL5P24-201ENST00000463742 885 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 PRDX3P4-201ENST00000470828 747 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 RPL23AP55-201ENST00000498163 452 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 TRAV31-201ENST00000502780 342 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 AC119751.1-201ENST00000513357 765 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 HNRNPKP5-201ENST00000515300 253 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 AC087369.1-201ENST00000520775 996 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 AP004371.1-201ENST00000525240 214 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 AC113192.3-201ENST00000529152 742 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 OR4A45P-201ENST00000529954 901 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 AP003385.6-201ENST00000531603 374 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 MIR5195-201ENST00000583555 115 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 SGO1P1-201ENST00000603525 1447 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 AC025588.3-201ENST00000604182 274 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 AC066616.2-201ENST00000559334 1481 ntBASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.91□□□□□ -1.78
HDDC3Q8N4P3 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.9□□□□□ -1.78
HDDC3Q8N4P3 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
HDDC3Q8N4P3 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
HDDC3Q8N4P3 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
HDDC3Q8N4P3 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
HDDC3Q8N4P3 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
HDDC3Q8N4P3 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
HDDC3Q8N4P3 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.9□□□□□ -1.78
HDDC3Q8N4P3 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.78
HDDC3Q8N4P3 AP001486.2-201ENST00000561652 5113 ntBASIC3.9□□□□□ -1.78
HDDC3Q8N4P3 RNU6-263P-201ENST00000363811 107 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 RNVU1-3-201ENST00000364313 161 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 U8.11-201ENST00000384699 133 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 U8.12-201ENST00000384701 133 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 MIR16-1-201ENST00000385271 89 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 TMSB4XP8-201ENST00000402089 135 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 MTCO3P31-201ENST00000405526 789 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 Z92545.1-201ENST00000411782 234 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 TMSB4XP6-201ENST00000415187 135 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 TMSB4XP1-201ENST00000424567 135 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC234064.1-201ENST00000436312 247 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 HSPD1P21-201ENST00000436541 245 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 VN1R25P-201ENST00000443385 738 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 OR51B8P-201ENST00000449892 769 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 NANOGP10-201ENST00000453325 895 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 VN1R40P-201ENST00000455196 941 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 NF1P3-201ENST00000457709 450 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 U8.18-201ENST00000459285 133 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 AC087499.8-201ENST00000578406 226 ntBASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.9□□□□□ -1.79
HDDC3Q8N4P3 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms