Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
FOXA3P55318 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
FOXA3P55318 RNU6-618P-201ENST00000363518 112 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 RNU6-335P-201ENST00000364563 113 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA3P55318 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
FOXA3P55318 RNU6-317P-201ENST00000384031 107 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 SNORA26.7-201ENST00000391288 122 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 MIR887-201ENST00000401258 79 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA3P55318 RPL7P10-201ENST00000417407 739 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA3P55318 AL035423.1-201ENST00000420331 213 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 AC244098.2-201ENST00000422068 99 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA3P55318 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA3P55318 AC016712.1-201ENST00000431088 378 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA3P55318 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA3P55318 RBMY2UP-201ENST00000453474 324 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 NECAP1P2-201ENST00000455668 727 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 AL590639.1-201ENST00000456484 337 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
FOXA3P55318 AL136126.1-201ENST00000473603 402 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 AP004217.1-201ENST00000480579 346 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXA3P55318 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXA3P55318 APOOP4-201ENST00000513530 597 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC2.37□□□□□ -2.03
FOXA3P55318 CSNK1A1P1-202ENST00000563423 981 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXA3P55318 AC012119.1-201ENST00000603184 222 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 AC015802.5-201ENST00000607478 399 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 AC010435.1-201ENST00000623353 1177 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 RNA5SP196-201ENST00000625967 102 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXA3P55318 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC2.37□□□□□ -2.03
FOXA3P55318 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC2.37□□□□□ -2.03
FOXA3P55318 HSPA8P19-201ENST00000505359 1517 ntBASIC2.37□□□□□ -2.03
FOXA3P55318 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.37□□□□□ -2.03
FOXA3P55318 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.36□□□□□ -2.03
FOXA3P55318 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
FOXA3P55318 DNAJC19P6-201ENST00000401853 280 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 AL355379.1-201ENST00000405542 640 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 RNA5SP274-201ENST00000410484 108 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC2.36□□□□□ -2.03
FOXA3P55318 AL356806.1-201ENST00000422524 916 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 TRIM60P9Y-201ENST00000438459 816 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 RPL21P2-201ENST00000440049 481 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 TRIM60P11Y-201ENST00000445313 801 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 HSFY6P-201ENST00000445573 403 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 RPL36AP33-201ENST00000450395 310 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXA3P55318 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXA3P55318 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC2.36□□□□□ -2.03
FOXA3P55318 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC2.36□□□□□ -2.03
FOXA3P55318 MTCO2P32-201ENST00000514865 403 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 RN7SKP122-201ENST00000515923 296 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 IGKV2-26-201ENST00000518305 343 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 IGKV2D-10-201ENST00000520194 281 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC2.36□□□□□ -2.03
FOXA3P55318 RGS5-218ENST00000526176 574 ntTSL 4 BASIC2.36□□□□□ -2.03
FOXA3P55318 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC2.36□□□□□ -2.03
FOXA3P55318 HSPE1P5-201ENST00000561489 272 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXA3P55318 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC2.36□□□□□ -2.03
FOXA3P55318 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.36□□□□□ -2.03
FOXA3P55318 PCNAP1-202ENST00000595299 752 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.36□□□□□ -2.03
FOXA3P55318 AL162713.1-201ENST00000604480 262 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 OR2BH1P-201ENST00000608850 864 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 AC011472.4-201ENST00000615848 491 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 AC006338.2-201ENST00000616864 791 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 MIR6864-201ENST00000617935 70 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 Z99129.2-201ENST00000619967 314 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC2.36□□□□□ -2.03
FOXA3P55318 AC093010.3-201ENST00000570269 15214 ntBASIC2.36□□□□□ -2.03
FOXA3P55318 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
FOXA3P55318 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
FOXA3P55318 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
FOXA3P55318 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
FOXA3P55318 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
FOXA3P55318 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
FOXA3P55318 RPL32P3-201ENST00000359025 275 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 SNORD17-201ENST00000390930 237 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 RPS3AP26-201ENST00000398259 784 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 HNRNPDP2-201ENST00000406475 478 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 SNORD88.1-201ENST00000408684 91 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 RNU6-628P-201ENST00000410675 107 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC2.35□□□□□ -2.03
FOXA3P55318 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXA3P55318 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC2.35□□□□□ -2.03
FOXA3P55318 RPL17P49-201ENST00000443728 411 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 AL590399.6-201ENST00000446396 307 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 GSTA11P-201ENST00000452866 669 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.35□□□□□ -2.03
FOXA3P55318 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.35□□□□□ -2.03
FOXA3P55318 RN7SL132P-201ENST00000478131 296 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 AC026979.1-201ENST00000492525 396 ntBASIC2.35□□□□□ -2.03
FOXA3P55318 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms