Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 HMGB1P6-201ENST00000569046 646 ntBASIC5.74□□□□□ -1.49
LIG3P49916 AC090615.1-201ENST00000577519 154 ntBASIC5.74□□□□□ -1.49
LIG3P49916 SNORD95-201ENST00000579879 68 ntBASIC5.74□□□□□ -1.49
LIG3P49916 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.74□□□□□ -1.49
LIG3P49916 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.74□□□□□ -1.49
LIG3P49916 AC005034.5-201ENST00000604219 466 ntBASIC5.74□□□□□ -1.49
LIG3P49916 AL391813.2-201ENST00000609113 322 ntBASIC5.74□□□□□ -1.49
LIG3P49916 MIR6864-201ENST00000617935 70 ntBASIC5.74□□□□□ -1.49
LIG3P49916 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG3P49916 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.74□□□□□ -1.49
LIG3P49916 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
LIG3P49916 MFSD8-239ENST00000641590 2479 ntBASIC5.74□□□□□ -1.49
LIG3P49916 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LIG3P49916 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LIG3P49916 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIG3P49916 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG3P49916 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
LIG3P49916 AL592148.3-201ENST00000608771 2646 ntBASIC5.74□□□□□ -1.49
LIG3P49916 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.74□□□□□ -1.49
LIG3P49916 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIG3P49916 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.73□□□□□ -1.49
LIG3P49916 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
LIG3P49916 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIG3P49916 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIG3P49916 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
LIG3P49916 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIG3P49916 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
LIG3P49916 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIG3P49916 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIG3P49916 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIG3P49916 ELL2P4-201ENST00000446870 1376 ntBASIC5.73□□□□□ -1.49
LIG3P49916 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
LIG3P49916 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
LIG3P49916 RNU6-169P-201ENST00000365336 107 ntBASIC5.73□□□□□ -1.49
LIG3P49916 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIG3P49916 RNU6-1207P-201ENST00000384343 107 ntBASIC5.73□□□□□ -1.49
LIG3P49916 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
LIG3P49916 RNU2-50P-201ENST00000410494 143 ntBASIC5.73□□□□□ -1.49
LIG3P49916 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC5.73□□□□□ -1.49
LIG3P49916 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.73□□□□□ -1.49
LIG3P49916 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.73□□□□□ -1.49
LIG3P49916 RPS15AP12-201ENST00000419498 388 ntBASIC5.73□□□□□ -1.49
LIG3P49916 AC012065.2-201ENST00000421295 375 ntBASIC5.73□□□□□ -1.49
LIG3P49916 AC007283.2-201ENST00000424739 197 ntBASIC5.73□□□□□ -1.49
LIG3P49916 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.73□□□□□ -1.49
LIG3P49916 OR2B7P-201ENST00000429302 934 ntBASIC5.73□□□□□ -1.49
LIG3P49916 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.73□□□□□ -1.49
LIG3P49916 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.73□□□□□ -1.49
LIG3P49916 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.73□□□□□ -1.49
LIG3P49916 AC108734.1-201ENST00000439549 399 ntBASIC5.73□□□□□ -1.49
LIG3P49916 AC016691.1-201ENST00000441321 413 ntBASIC5.73□□□□□ -1.49
LIG3P49916 OR7E116P-201ENST00000448529 957 ntBASIC5.73□□□□□ -1.49
LIG3P49916 SLC25A18P1-201ENST00000449385 454 ntBASIC5.73□□□□□ -1.49
LIG3P49916 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.73□□□□□ -1.49
LIG3P49916 snoU13.7-201ENST00000459220 104 ntBASIC5.73□□□□□ -1.49
LIG3P49916 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.73□□□□□ -1.49
LIG3P49916 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.73□□□□□ -1.49
LIG3P49916 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
LIG3P49916 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC5.73□□□□□ -1.49
LIG3P49916 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.73□□□□□ -1.49
LIG3P49916 AC074255.1-201ENST00000511259 501 ntBASIC5.73□□□□□ -1.49
LIG3P49916 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.73□□□□□ -1.49
LIG3P49916 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC5.73□□□□□ -1.49
LIG3P49916 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.73□□□□□ -1.49
LIG3P49916 MRPS16P1-201ENST00000523462 412 ntBASIC5.73□□□□□ -1.49
LIG3P49916 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.73□□□□□ -1.49
LIG3P49916 AC024224.1-201ENST00000538284 609 ntBASIC5.73□□□□□ -1.49
LIG3P49916 PDCD5P1-201ENST00000543528 309 ntBASIC5.73□□□□□ -1.49
LIG3P49916 AC022404.1-201ENST00000555320 273 ntBASIC5.73□□□□□ -1.49
LIG3P49916 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC5.73□□□□□ -1.49
LIG3P49916 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC5.73□□□□□ -1.49
LIG3P49916 RN7SL753P-201ENST00000581238 290 ntBASIC5.73□□□□□ -1.49
LIG3P49916 MIR4505-201ENST00000582238 73 ntBASIC5.73□□□□□ -1.49
LIG3P49916 Z84480.1-201ENST00000605131 311 ntBASIC5.73□□□□□ -1.49
LIG3P49916 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.73□□□□□ -1.49
LIG3P49916 AL158801.5-201ENST00000623123 465 ntBASIC5.73□□□□□ -1.49
LIG3P49916 AC112204.3-201ENST00000623822 332 ntBASIC5.73□□□□□ -1.49
LIG3P49916 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIG3P49916 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.73□□□□□ -1.49
LIG3P49916 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
LIG3P49916 SRRM1P3-201ENST00000426911 2678 ntBASIC5.72□□□□□ -1.49
LIG3P49916 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.72□□□□□ -1.49
LIG3P49916 AP001642.1-201ENST00000624727 2117 ntBASIC5.72□□□□□ -1.49
LIG3P49916 AP000756.2-201ENST00000624168 2567 ntBASIC5.72□□□□□ -1.49
LIG3P49916 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIG3P49916 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIG3P49916 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.72□□□□□ -1.49
LIG3P49916 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
LIG3P49916 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.72□□□□□ -1.49
LIG3P49916 AC000374.1-201ENST00000434698 1745 ntBASIC5.72□□□□□ -1.49
LIG3P49916 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
LIG3P49916 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.72□□□□□ -1.49
LIG3P49916 RNU6-97P-201ENST00000363387 104 ntBASIC5.72□□□□□ -1.49
LIG3P49916 RNU6-1243P-201ENST00000364028 107 ntBASIC5.72□□□□□ -1.49
LIG3P49916 Y_RNA.234-201ENST00000364409 97 ntBASIC5.72□□□□□ -1.49
LIG3P49916 RNY4P16-201ENST00000364768 94 ntBASIC5.72□□□□□ -1.49
LIG3P49916 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC5.72□□□□□ -1.49
LIG3P49916 RNU6-1158P-201ENST00000391167 107 ntBASIC5.72□□□□□ -1.49
LIG3P49916 RNU2-9P-201ENST00000410194 145 ntBASIC5.72□□□□□ -1.49
LIG3P49916 RN7SKP235-201ENST00000410662 305 ntBASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms