Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RPL23P2-201ENST00000320371 421 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 RPL21P132-201ENST00000331267 462 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AL672167.1-206ENST00000356293 943 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 Y_RNA.302-201ENST00000364997 102 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 SNORD6-201ENST00000365444 73 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 RNU6-441P-201ENST00000384545 106 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 U3.30-201ENST00000391308 210 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA1P49639 RNU6ATAC7P-201ENST00000408111 127 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.75□□□□□ -1.81
HOXA1P49639 RNU4-34P-201ENST00000410431 124 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA1P49639 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA1P49639 SDCBPP2-201ENST00000424643 885 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 RPL23AP25-201ENST00000430973 463 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 CEACAMP1-201ENST00000434624 1035 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA1P49639 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA1P49639 USP9YP7-201ENST00000436723 430 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 EPS15P1-201ENST00000448836 336 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 MTND2P19-201ENST00000449129 1012 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC010733.1-201ENST00000451515 401 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 USP9YP32-201ENST00000452432 430 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC079168.2-201ENST00000453977 416 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA1P49639 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA1P49639 AC109462.1-201ENST00000491087 368 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA1P49639 LAMTOR3P2-201ENST00000504479 232 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 DSTNP2-201ENST00000504533 515 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC010424.1-201ENST00000506336 297 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA1P49639 MRPS33P2-201ENST00000507850 322 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC091868.1-201ENST00000508746 304 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.75□□□□□ -1.81
HOXA1P49639 RNU6-583P-201ENST00000516012 92 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 RNA5SP309-201ENST00000516670 106 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 RNA5SP34-201ENST00000516887 130 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 RN7SKP147-201ENST00000517154 244 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC106038.2-201ENST00000520706 568 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.75□□□□□ -1.81
HOXA1P49639 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA1P49639 HIGD1AP10-201ENST00000527837 282 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA1P49639 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA1P49639 AL389895.1-201ENST00000554127 252 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA1P49639 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.75□□□□□ -1.81
HOXA1P49639 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.75□□□□□ -1.81
HOXA1P49639 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA1P49639 CYCSP2-201ENST00000558168 301 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA1P49639 AC074051.3-201ENST00000570238 358 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 MIR4504-201ENST00000577413 92 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 MIR5699-201ENST00000578903 90 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA1P49639 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA1P49639 AC022726.1-201ENST00000587475 207 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC020914.6-201ENST00000594327 272 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA1P49639 AC103710.3-201ENST00000608157 948 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC090425.2-201ENST00000608818 501 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA1P49639 AC023043.4-201ENST00000612081 449 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AL356596.1-201ENST00000624230 379 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 AL355480.1-201ENST00000629041 99 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA1P49639 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA1P49639 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA1P49639 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA1P49639 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA1P49639 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA1P49639 MTND4P16-201ENST00000466108 1367 ntBASIC3.75□□□□□ -1.81
HOXA1P49639 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA1P49639 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.75□□□□□ -1.81
HOXA1P49639 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA1P49639 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA1P49639 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
HOXA1P49639 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXA1P49639 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA1P49639 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA1P49639 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
HOXA1P49639 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA1P49639 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXA1P49639 AL136964.1-201ENST00000622038 2990 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
HOXA1P49639 RNU4-21P-201ENST00000362802 126 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 U3.4-201ENST00000363352 213 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA1P49639 SNORD116-4-201ENST00000384733 96 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 RNU6-328P-201ENST00000390887 106 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 IL6-206ENST00000407492 926 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA1P49639 AL591848.1-201ENST00000413092 322 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXA1P49639 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 MTCYBP38-201ENST00000417160 1123 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 AL355433.1-201ENST00000422804 300 ntBASIC3.74□□□□□ -1.81
HOXA1P49639 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms