Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 U2.14-201ENST00000615943 113 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 AP001282.2-201ENST00000616149 309 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC5.57□□□□□ -1.52
COL8A1P27658 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
COL8A1P27658 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC5.57□□□□□ -1.52
COL8A1P27658 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL8A1P27658 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL8A1P27658 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL8A1P27658 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL8A1P27658 HSPA8P18-201ENST00000439846 1928 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.56□□□□□ -1.52
COL8A1P27658 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL8A1P27658 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC5.56□□□□□ -1.52
COL8A1P27658 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.56□□□□□ -1.52
COL8A1P27658 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.56□□□□□ -1.52
COL8A1P27658 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL8A1P27658 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.56□□□□□ -1.52
COL8A1P27658 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
COL8A1P27658 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL8A1P27658 AC132219.2-201ENST00000624416 2327 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC5.56□□□□□ -1.52
COL8A1P27658 U3.11-201ENST00000364476 212 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.56□□□□□ -1.52
COL8A1P27658 AL356421.1-201ENST00000403255 413 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 MRPL35P1-201ENST00000404272 572 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 AL359092.1-201ENST00000417156 265 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 GSTA6P-201ENST00000424144 582 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 AC016027.5-201ENST00000427227 210 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 AL031584.1-201ENST00000447169 754 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC5.56□□□□□ -1.52
COL8A1P27658 AL136097.1-201ENST00000456945 913 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC5.56□□□□□ -1.52
COL8A1P27658 RN7SL826P-201ENST00000479724 288 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 AC007991.1-201ENST00000522680 631 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 RPA2P3-201ENST00000533268 770 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 AP002392.1-201ENST00000537692 208 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.56□□□□□ -1.52
COL8A1P27658 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.56□□□□□ -1.52
COL8A1P27658 AL031666.3-201ENST00000609320 1006 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 AC103710.2-201ENST00000609912 942 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 AC005344.1-201ENST00000613391 459 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 AL021918.2-201ENST00000613415 194 ntBASIC5.56□□□□□ -1.52
COL8A1P27658 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.56□□□□□ -1.52
COL8A1P27658 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL8A1P27658 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC5.56□□□□□ -1.52
COL8A1P27658 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.56□□□□□ -1.52
COL8A1P27658 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
COL8A1P27658 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
COL8A1P27658 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL8A1P27658 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
COL8A1P27658 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL8A1P27658 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL8A1P27658 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL8A1P27658 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL8A1P27658 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL8A1P27658 MTHFD1P1-201ENST00000413059 2764 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC5.55□□□□□ -1.52
COL8A1P27658 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC5.55□□□□□ -1.52
COL8A1P27658 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL8A1P27658 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL8A1P27658 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL8A1P27658 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL8A1P27658 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL8A1P27658 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL8A1P27658 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL8A1P27658 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
COL8A1P27658 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
COL8A1P27658 RNU1-134P-201ENST00000362935 165 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 RNU5A-8P-201ENST00000364102 114 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 RNU4-50P-201ENST00000364361 141 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 RNU6-22P-201ENST00000384355 107 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 MIR199B-201ENST00000384849 110 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 MIR143-201ENST00000385300 106 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 RNA5SP219-201ENST00000390940 113 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 AC097374.1-203ENST00000400783 485 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 MIR1203-201ENST00000408812 85 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 RNU2-25P-201ENST00000411041 191 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.55□□□□□ -1.52
COL8A1P27658 AL139095.3-201ENST00000419672 1203 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC5.55□□□□□ -1.52
COL8A1P27658 AL590632.1-201ENST00000424289 371 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.55□□□□□ -1.52
COL8A1P27658 AL445665.1-202ENST00000452436 324 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 AL035090.1-201ENST00000454835 332 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 RN7SL834P-201ENST00000461450 286 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 AL049830.2-201ENST00000480072 201 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 RN7SL193P-201ENST00000491708 276 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 AC105758.1-201ENST00000506038 399 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 OR51A1P-201ENST00000511110 946 ntBASIC5.55□□□□□ -1.52
COL8A1P27658 AC107393.1-201ENST00000512403 346 ntBASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms