Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4□□□□□ -1.77
MSH3P20585 HMGB1P5-201ENST00000255320 642 ntBASIC4□□□□□ -1.77
MSH3P20585 SPRR2C-201ENST00000290702 219 ntBASIC4□□□□□ -1.77
MSH3P20585 Y_RNA.192-201ENST00000363977 102 ntBASIC4□□□□□ -1.77
MSH3P20585 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
MSH3P20585 MIR217-201ENST00000384817 110 ntBASIC4□□□□□ -1.77
MSH3P20585 ZNF603P-201ENST00000405613 487 ntBASIC4□□□□□ -1.77
MSH3P20585 RPL21P65-201ENST00000406094 466 ntBASIC4□□□□□ -1.77
MSH3P20585 MIR1251-201ENST00000408552 70 ntBASIC4□□□□□ -1.77
MSH3P20585 RNA5SP239-201ENST00000410218 129 ntBASIC4□□□□□ -1.77
MSH3P20585 MTND4P22-201ENST00000413116 1169 ntBASIC4□□□□□ -1.77
MSH3P20585 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4□□□□□ -1.77
MSH3P20585 RPL7P44-201ENST00000424827 742 ntBASIC4□□□□□ -1.77
MSH3P20585 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4□□□□□ -1.77
MSH3P20585 DPRXP1-201ENST00000426312 460 ntBASIC4□□□□□ -1.77
MSH3P20585 Z93242.1-201ENST00000427102 353 ntBASIC4□□□□□ -1.77
MSH3P20585 MTND5P25-201ENST00000430499 799 ntBASIC4□□□□□ -1.77
MSH3P20585 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4□□□□□ -1.77
MSH3P20585 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4□□□□□ -1.77
MSH3P20585 AL356276.2-201ENST00000435919 558 ntBASIC4□□□□□ -1.77
MSH3P20585 AL008629.1-201ENST00000438615 184 ntBASIC4□□□□□ -1.77
MSH3P20585 USP9YP22-201ENST00000438971 294 ntBASIC4□□□□□ -1.77
MSH3P20585 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4□□□□□ -1.77
MSH3P20585 COX6CP18-201ENST00000448769 222 ntBASIC4□□□□□ -1.77
MSH3P20585 RPL7P31-201ENST00000450192 724 ntBASIC4□□□□□ -1.77
MSH3P20585 VPS26AP1-201ENST00000483197 979 ntBASIC4□□□□□ -1.77
MSH3P20585 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4□□□□□ -1.77
MSH3P20585 RPL30P11-201ENST00000495304 339 ntBASIC4□□□□□ -1.77
MSH3P20585 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4□□□□□ -1.77
MSH3P20585 AC008885.2-201ENST00000509506 930 ntBASIC4□□□□□ -1.77
MSH3P20585 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4□□□□□ -1.77
MSH3P20585 AC008837.2-201ENST00000513076 418 ntBASIC4□□□□□ -1.77
MSH3P20585 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC4□□□□□ -1.77
MSH3P20585 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4□□□□□ -1.77
MSH3P20585 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC4□□□□□ -1.77
MSH3P20585 PDCL2P2-201ENST00000533651 189 ntBASIC4□□□□□ -1.77
MSH3P20585 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4□□□□□ -1.77
MSH3P20585 AC010198.2-201ENST00000550612 259 ntBASIC4□□□□□ -1.77
MSH3P20585 AL442163.2-201ENST00000553912 710 ntBASIC4□□□□□ -1.77
MSH3P20585 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4□□□□□ -1.77
MSH3P20585 BNIP3P26-201ENST00000600827 554 ntBASIC4□□□□□ -1.77
MSH3P20585 AC010857.1-201ENST00000606398 594 ntBASIC4□□□□□ -1.77
MSH3P20585 MIR6868-201ENST00000611215 58 ntBASIC4□□□□□ -1.77
MSH3P20585 AL359715.5-201ENST00000623431 443 ntBASIC4□□□□□ -1.77
MSH3P20585 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4□□□□□ -1.77
MSH3P20585 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4□□□□□ -1.77
MSH3P20585 RLIMP1-201ENST00000339626 1680 ntBASIC4□□□□□ -1.77
MSH3P20585 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4□□□□□ -1.77
MSH3P20585 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
MSH3P20585 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
MSH3P20585 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
MSH3P20585 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSH3P20585 AL049737.1-201ENST00000413920 1403 ntBASIC3.99□□□□□ -1.77
MSH3P20585 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSH3P20585 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSH3P20585 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
MSH3P20585 RN7SKP227-201ENST00000364445 330 ntBASIC3.99□□□□□ -1.77
MSH3P20585 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.99□□□□□ -1.77
MSH3P20585 RNU4-6P-201ENST00000410804 122 ntBASIC3.99□□□□□ -1.77
MSH3P20585 OR8G2P-201ENST00000412796 908 ntBASIC3.99□□□□□ -1.77
MSH3P20585 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.99□□□□□ -1.77
MSH3P20585 CYP4F29P-201ENST00000420685 446 ntBASIC3.99□□□□□ -1.77
MSH3P20585 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.99□□□□□ -1.77
MSH3P20585 GTF2IP23-201ENST00000423746 351 ntBASIC3.99□□□□□ -1.77
MSH3P20585 RPL30P3-201ENST00000424262 333 ntBASIC3.99□□□□□ -1.77
MSH3P20585 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.99□□□□□ -1.77
MSH3P20585 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC3.99□□□□□ -1.77
MSH3P20585 AL691449.1-201ENST00000426570 421 ntBASIC3.99□□□□□ -1.77
MSH3P20585 USP9YP11-201ENST00000427537 717 ntBASIC3.99□□□□□ -1.77
MSH3P20585 ATP5HP2-201ENST00000433885 485 ntBASIC3.99□□□□□ -1.77
MSH3P20585 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC3.99□□□□□ -1.77
MSH3P20585 Z83846.1-201ENST00000446798 265 ntBASIC3.99□□□□□ -1.77
MSH3P20585 OR6K5P-201ENST00000447050 945 ntBASIC3.99□□□□□ -1.77
MSH3P20585 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.99□□□□□ -1.77
MSH3P20585 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.99□□□□□ -1.77
MSH3P20585 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.99□□□□□ -1.77
MSH3P20585 AC104689.1-201ENST00000473356 768 ntBASIC3.99□□□□□ -1.77
MSH3P20585 AC110792.1-201ENST00000491826 472 ntBASIC3.99□□□□□ -1.77
MSH3P20585 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.99□□□□□ -1.77
MSH3P20585 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.99□□□□□ -1.77
MSH3P20585 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.99□□□□□ -1.77
MSH3P20585 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
MSH3P20585 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.99□□□□□ -1.77
MSH3P20585 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.99□□□□□ -1.77
MSH3P20585 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.99□□□□□ -1.77
MSH3P20585 AC007834.2-201ENST00000536310 343 ntBASIC3.99□□□□□ -1.77
MSH3P20585 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.99□□□□□ -1.77
MSH3P20585 OSBPL9P5-201ENST00000542581 171 ntBASIC3.99□□□□□ -1.77
MSH3P20585 AC007424.1-203ENST00000554613 687 ntBASIC3.99□□□□□ -1.77
MSH3P20585 AC087465.1-201ENST00000560574 245 ntBASIC3.99□□□□□ -1.77
MSH3P20585 AC007224.1-201ENST00000564410 144 ntBASIC3.99□□□□□ -1.77
MSH3P20585 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.99□□□□□ -1.77
MSH3P20585 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.99□□□□□ -1.77
MSH3P20585 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.99□□□□□ -1.77
MSH3P20585 AP003973.1-201ENST00000604639 691 ntBASIC3.99□□□□□ -1.77
MSH3P20585 DPRXP5-201ENST00000604662 539 ntBASIC3.99□□□□□ -1.77
MSH3P20585 AC080013.3-201ENST00000606839 578 ntBASIC3.99□□□□□ -1.77
MSH3P20585 AL450489.1-201ENST00000612071 468 ntBASIC3.99□□□□□ -1.77
MSH3P20585 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.99□□□□□ -1.77
MSH3P20585 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms