Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU6-488P-201ENST00000515918 99 ntBASIC3.71□□□□□ -1.82
SDC3O75056 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.71□□□□□ -1.82
SDC3O75056 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.71□□□□□ -1.82
SDC3O75056 AC006116.7-201ENST00000590141 756 ntBASIC3.71□□□□□ -1.82
SDC3O75056 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SDC3O75056 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SDC3O75056 AL354760.1-201ENST00000608357 643 ntBASIC3.71□□□□□ -1.82
SDC3O75056 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
SDC3O75056 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
SDC3O75056 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.71□□□□□ -1.82
SDC3O75056 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SDC3O75056 AP001486.2-201ENST00000561652 5113 ntBASIC3.71□□□□□ -1.82
SDC3O75056 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.71□□□□□ -1.82
SDC3O75056 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SDC3O75056 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SDC3O75056 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
SDC3O75056 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.7□□□□□ -1.82
SDC3O75056 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SDC3O75056 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SDC3O75056 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.7□□□□□ -1.82
SDC3O75056 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
SDC3O75056 RNU6-1243P-201ENST00000364028 107 ntBASIC3.7□□□□□ -1.82
SDC3O75056 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
SDC3O75056 RNU6-1257P-201ENST00000384625 110 ntBASIC3.7□□□□□ -1.82
SDC3O75056 MIR199A2-201ENST00000385289 110 ntBASIC3.7□□□□□ -1.82
SDC3O75056 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SDC3O75056 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.7□□□□□ -1.82
SDC3O75056 AL024507.1-201ENST00000412741 274 ntBASIC3.7□□□□□ -1.82
SDC3O75056 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.7□□□□□ -1.82
SDC3O75056 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.7□□□□□ -1.82
SDC3O75056 HMGB1P45-201ENST00000435986 653 ntBASIC3.7□□□□□ -1.82
SDC3O75056 AL590399.6-201ENST00000446396 307 ntBASIC3.7□□□□□ -1.82
SDC3O75056 SEPT14P24-201ENST00000447236 180 ntBASIC3.7□□□□□ -1.82
SDC3O75056 RPS3AP46-201ENST00000448352 682 ntBASIC3.7□□□□□ -1.82
SDC3O75056 RPS17P13-201ENST00000448974 407 ntBASIC3.7□□□□□ -1.82
SDC3O75056 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.7□□□□□ -1.82
SDC3O75056 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.7□□□□□ -1.82
SDC3O75056 NIPA2P2-201ENST00000496376 1083 ntBASIC3.7□□□□□ -1.82
SDC3O75056 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.7□□□□□ -1.82
SDC3O75056 USP9YP5-201ENST00000511770 630 ntBASIC3.7□□□□□ -1.82
SDC3O75056 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.7□□□□□ -1.82
SDC3O75056 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.7□□□□□ -1.82
SDC3O75056 AC016065.2-201ENST00000514530 444 ntBASIC3.7□□□□□ -1.82
SDC3O75056 HIGD1AP3-201ENST00000515857 278 ntBASIC3.7□□□□□ -1.82
SDC3O75056 SNORA70.24-201ENST00000517233 118 ntBASIC3.7□□□□□ -1.82
SDC3O75056 AP003102.1-201ENST00000525638 661 ntBASIC3.7□□□□□ -1.82
SDC3O75056 AP003066.2-201ENST00000529375 555 ntBASIC3.7□□□□□ -1.82
SDC3O75056 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC3.7□□□□□ -1.82
SDC3O75056 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.7□□□□□ -1.82
SDC3O75056 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.7□□□□□ -1.82
SDC3O75056 MTCYBP28-201ENST00000566728 1132 ntBASIC3.7□□□□□ -1.82
SDC3O75056 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.7□□□□□ -1.82
SDC3O75056 AL009028.1-201ENST00000604895 802 ntBASIC3.7□□□□□ -1.82
SDC3O75056 AL109620.1-201ENST00000618738 1197 ntBASIC3.7□□□□□ -1.82
SDC3O75056 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.7□□□□□ -1.82
SDC3O75056 AL138955.1-201ENST00000622881 1040 ntBASIC3.7□□□□□ -1.82
SDC3O75056 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.7□□□□□ -1.82
SDC3O75056 AC106858.1-201ENST00000637497 429 ntBASIC3.7□□□□□ -1.82
SDC3O75056 MTND4P10-201ENST00000446199 1363 ntBASIC3.7□□□□□ -1.82
SDC3O75056 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SDC3O75056 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
SDC3O75056 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SDC3O75056 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.7□□□□□ -1.82
SDC3O75056 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.7□□□□□ -1.82
SDC3O75056 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.7□□□□□ -1.82
SDC3O75056 LINC00561-201ENST00000565815 2738 ntBASIC3.7□□□□□ -1.82
SDC3O75056 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SDC3O75056 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SDC3O75056 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SDC3O75056 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SDC3O75056 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.69□□□□□ -1.82
SDC3O75056 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.69□□□□□ -1.82
SDC3O75056 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.69□□□□□ -1.82
SDC3O75056 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SDC3O75056 AC025263.3-201ENST00000622965 1396 ntBASIC3.69□□□□□ -1.82
SDC3O75056 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
SDC3O75056 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
SDC3O75056 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
SDC3O75056 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.69□□□□□ -1.82
SDC3O75056 AC234772.1-201ENST00000377927 937 ntBASIC3.69□□□□□ -1.82
SDC3O75056 U6.112-201ENST00000384129 70 ntBASIC3.69□□□□□ -1.82
SDC3O75056 MIR491-201ENST00000384877 84 ntBASIC3.69□□□□□ -1.82
SDC3O75056 MIR218-2-201ENST00000385006 110 ntBASIC3.69□□□□□ -1.82
SDC3O75056 AC069218.2-201ENST00000411665 344 ntBASIC3.69□□□□□ -1.82
SDC3O75056 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.69□□□□□ -1.82
SDC3O75056 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.69□□□□□ -1.82
SDC3O75056 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.69□□□□□ -1.82
SDC3O75056 AC246680.2-201ENST00000422106 389 ntBASIC3.69□□□□□ -1.82
SDC3O75056 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.69□□□□□ -1.82
SDC3O75056 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.69□□□□□ -1.82
SDC3O75056 HMGN2P21-201ENST00000447764 270 ntBASIC3.69□□□□□ -1.82
SDC3O75056 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SDC3O75056 HMGN1P5-201ENST00000448591 263 ntBASIC3.69□□□□□ -1.82
SDC3O75056 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC3.69□□□□□ -1.82
SDC3O75056 CYCSP35-201ENST00000451978 304 ntBASIC3.69□□□□□ -1.82
SDC3O75056 RPS27P23-201ENST00000487608 251 ntBASIC3.69□□□□□ -1.82
SDC3O75056 RPL5P23-201ENST00000496040 868 ntBASIC3.69□□□□□ -1.82
SDC3O75056 AC026414.1-201ENST00000504046 698 ntBASIC3.69□□□□□ -1.82
SDC3O75056 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.69□□□□□ -1.82
SDC3O75056 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms