Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 AC118282.2-201ENST00000508739 374 ntBASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 FABP5P12-201ENST00000515543 389 ntBASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 SNORA3.4-201ENST00000515969 96 ntBASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 AC084824.1-201ENST00000550917 1005 ntBASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 NBEAP1-201ENST00000554452 979 ntBASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 MTCYBP27-201ENST00000555160 670 ntBASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 VN1R85P-201ENST00000601587 426 ntBASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 AC080013.6-201ENST00000606185 215 ntBASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 AC099676.1-201ENST00000608886 657 ntBASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 MIR6868-201ENST00000611215 58 ntBASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 AL157770.1-201ENST00000623049 439 ntBASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 AP000676.3-201ENST00000623299 569 ntBASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 AC092608.3-201ENST00000625017 386 ntBASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SNX9Q9Y5X1 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 FAM133CP-201ENST00000332869 704 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 Y_RNA.169-201ENST00000363745 96 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 SNORA37-201ENST00000384504 129 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 PPIAP31-201ENST00000405422 495 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 RNU2-6P-201ENST00000411404 190 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 CYP4F29P-201ENST00000420685 446 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AL691449.1-201ENST00000426570 421 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 MTND1P32-201ENST00000433043 938 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 RPL21P89-201ENST00000444021 467 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 ATG12P2-201ENST00000456830 416 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 RPS3AP22-201ENST00000488297 769 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 OR5H4P-201ENST00000510851 923 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AC010486.3-201ENST00000511602 785 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 MRPS33P3-201ENST00000513456 322 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AP000926.4-201ENST00000527351 454 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 MTND2P26-201ENST00000528255 1029 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AC040904.1-201ENST00000590850 223 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AC080013.3-201ENST00000606839 578 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AC024941.1-201ENST00000612250 334 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AC004825.2-201ENST00000616634 455 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AL512506.2-201ENST00000624472 458 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 ATE1-AS1-202ENST00000636460 506 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 AC025263.3-201ENST00000622965 1396 ntBASIC4.34□□□□□ -1.71
SNX9Q9Y5X1 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.34□□□□□ -1.72
SNX9Q9Y5X1 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.34□□□□□ -1.72
SNX9Q9Y5X1 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
SNX9Q9Y5X1 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
SNX9Q9Y5X1 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 MARK2P15-201ENST00000432204 2186 ntBASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 SGO1P1-201ENST00000603525 1447 ntBASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 NACA3P-201ENST00000359690 648 ntBASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 Y_RNA.192-201ENST00000363977 102 ntBASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 RNU6-619P-201ENST00000365146 108 ntBASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 RNU6-157P-201ENST00000383957 107 ntBASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 MIR16-1-201ENST00000385271 89 ntBASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 SNORA57.1-201ENST00000391227 145 ntBASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 RPL7P44-201ENST00000424827 742 ntBASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 RPS6P12-201ENST00000432491 726 ntBASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 AC092393.1-201ENST00000439625 742 ntBASIC4.33□□□□□ -1.72
SNX9Q9Y5X1 RPS7P5-201ENST00000441482 581 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms