Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 PTGES3P3-201ENST00000511479 482 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC093755.1-201ENST00000512950 1023 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC016065.2-201ENST00000514530 444 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 PAICSP4-201ENST00000517543 1253 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC026403.1-201ENST00000518938 295 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AP003102.1-201ENST00000525638 661 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AL121766.1-201ENST00000547436 487 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC023161.2-201ENST00000551218 780 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AL360157.1-201ENST00000565962 87 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 YWHAQP7-201ENST00000603536 658 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 RPAP2P1-201ENST00000603626 1168 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 BNIP3P31-201ENST00000604515 566 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AP002802.2-201ENST00000605877 235 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC112200.1-201ENST00000625015 234 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 ELL2P4-201ENST00000446870 1376 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC007823.1-201ENST00000569932 1566 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 SAGE4P-201ENST00000442271 3381 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 LINC00561-201ENST00000565815 2738 ntBASIC3.7□□□□□ -1.82
LHX3Q9UBR4 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.7□□□□□ -1.82
LHX3Q9UBR4 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 SNORD9-201ENST00000362566 104 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 RNU6-619P-201ENST00000365146 108 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 ATP5F1P3-201ENST00000397213 657 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 RPL7P27-201ENST00000403775 720 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 GSTA8P-201ENST00000404253 637 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 ZNF603P-201ENST00000405613 487 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AC073264.1-201ENST00000411508 416 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 SFR1P2-201ENST00000421841 730 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AC233981.1-201ENST00000423224 461 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 ZNF736P1Y-201ENST00000440402 1276 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 RPL29P29-201ENST00000448725 423 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AC099563.1-201ENST00000456086 418 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 RANP9-201ENST00000519957 271 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 OR8K4P-201ENST00000534608 872 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AC011492.1-201ENST00000600023 315 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 RNA5SP108-201ENST00000605921 117 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AL512427.1-201ENST00000618593 349 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 AC126544.2-201ENST00000625174 749 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 NCAPGP1-201ENST00000505112 1814 ntBASIC3.69□□□□□ -1.82
LHX3Q9UBR4 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LHX3Q9UBR4 PNPT1P2-201ENST00000456768 2050 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AC007685.1-201ENST00000329806 452 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 RNU6-1257P-201ENST00000384625 110 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 MCTS2P-201ENST00000394552 546 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AL603865.2-201ENST00000401679 213 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 TMSB4XP8-201ENST00000402089 135 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 STAT4-203ENST00000409995 709 ntTSL 5 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 RN7SKP27-201ENST00000410684 333 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 TMSB4XP6-201ENST00000415187 135 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 RPS3AP9-201ENST00000417027 792 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 TMSB4XP1-201ENST00000424567 135 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.68□□□□□ -1.82
LHX3Q9UBR4 MOB1AP1-201ENST00000430903 535 ntBASIC3.68□□□□□ -1.82
LHX3Q9UBR4 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms