Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 SNORA75-201ENST00000384158 137 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 RNY3P10-201ENST00000384764 102 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AL590762.2-201ENST00000395798 571 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 RN7SKP267-201ENST00000410381 285 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 USP9YP33-201ENST00000412220 421 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AL591848.1-201ENST00000413092 322 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC009237.10-201ENST00000414112 510 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 FABP7P1-201ENST00000424004 391 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 MTATP6P13-201ENST00000438531 667 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 CBX1P4-201ENST00000439415 457 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 H2AFZP5-201ENST00000446960 382 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 OR6C5P-201ENST00000452388 923 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 RPL23AP12-201ENST00000467573 473 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 RN7SL354P-201ENST00000469282 294 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC104763.1-201ENST00000475274 360 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 MTCO1P30-201ENST00000515244 580 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 IGKV2-36-201ENST00000519999 223 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AP001207.1-201ENST00000524051 481 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 OR5G4P-201ENST00000525251 760 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 VN1R84P-201ENST00000593697 235 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC083899.3-201ENST00000603413 594 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 NDUFA8P1-201ENST00000605525 367 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC068944.2-201ENST00000610373 403 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 Z99129.1-201ENST00000612510 255 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC004825.2-201ENST00000616634 455 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC025048.6-202ENST00000627667 438 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 AC092192.1-201ENST00000633154 1018 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 DHX9P1-201ENST00000436565 3076 ntBASIC4.77□□□□□ -1.65
DKK3Q9UBP4 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
DKK3Q9UBP4 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AL590240.1-201ENST00000334118 313 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 Y_RNA.359-201ENST00000365498 102 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 RNU6-398P-201ENST00000384143 109 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC022028.1-201ENST00000412054 408 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 RGS17P1-201ENST00000423358 553 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 FTH1P6-201ENST00000430768 320 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 OFD1P13Y-201ENST00000431179 1232 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AL512286.1-201ENST00000439244 400 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC069285.2-201ENST00000440210 275 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AL031667.1-201ENST00000440222 725 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 TPTE2P6-202ENST00000445572 1007 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC006511.1-201ENST00000470614 315 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC103987.1-201ENST00000473394 348 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC025164.1-201ENST00000496249 478 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC021146.3-201ENST00000511911 260 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 RNU6-1178P-201ENST00000516674 107 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 RN7SKP283-201ENST00000517197 270 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC008802.1-201ENST00000519121 791 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 DUXAP2-201ENST00000519198 589 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 TRAV15-201ENST00000556680 249 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 RN7SL652P-201ENST00000577769 300 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC010928.1-201ENST00000592477 1447 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms