Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS35Q96QK1 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS35Q96QK1 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS35Q96QK1 AC025750.1-201ENST00000399891 379 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 AL590704.1-201ENST00000402856 794 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 RNU6ATAC-201ENST00000408749 126 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 AC127526.1-201ENST00000417526 366 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 AC008280.1-201ENST00000418851 412 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 AL049610.1-201ENST00000423374 372 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 AL009174.1-201ENST00000426577 416 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 DEFB130D-201ENST00000426866 237 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 AC010881.1-201ENST00000433830 235 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 RPS26P56-201ENST00000444468 240 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 RPL23AP62-201ENST00000463396 453 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 RPL23AP14-201ENST00000468281 468 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 AC022034.3-201ENST00000471393 478 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 AP001086.1-201ENST00000494882 321 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 UBE2CP3-201ENST00000502715 450 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 AC004069.2-201ENST00000505438 1114 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 AC092747.2-201ENST00000545069 983 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 AC112230.1-201ENST00000604342 547 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 AP005229.2-201ENST00000609980 697 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.7□□□□□ -1.82
VPS35Q96QK1 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS35Q96QK1 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS35Q96QK1 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS35Q96QK1 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS35Q96QK1 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS35Q96QK1 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS35Q96QK1 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS35Q96QK1 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.69□□□□□ -1.82
VPS35Q96QK1 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS35Q96QK1 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS35Q96QK1 MTCO1P24-201ENST00000515438 1558 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 ELL2P4-201ENST00000446870 1376 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 RNU6-354P-201ENST00000383862 107 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 RNU6-610P-201ENST00000384264 107 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 RNU6-932P-201ENST00000391108 106 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 SOD2P1-201ENST00000396543 562 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 MTCO3P31-201ENST00000405526 789 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 AL355379.1-201ENST00000405542 640 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS35Q96QK1 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS35Q96QK1 AL512637.2-201ENST00000431287 1256 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 AL445584.1-201ENST00000431451 330 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 AL035246.1-201ENST00000433554 1255 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS35Q96QK1 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.69□□□□□ -1.82
VPS35Q96QK1 AC002542.1-201ENST00000440683 193 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 AL590399.6-201ENST00000446396 307 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 HMGN2P21-201ENST00000447764 270 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.69□□□□□ -1.82
VPS35Q96QK1 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS35Q96QK1 DNAJC19P1-201ENST00000455312 319 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VPS35Q96QK1 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS35Q96QK1 BTF3L4P4-201ENST00000506381 449 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 AC007991.1-201ENST00000522680 631 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 MTCO1P49-201ENST00000523429 802 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 OR4R2P-201ENST00000530815 597 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 MIR4789-201ENST00000577469 82 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS35Q96QK1 AP002906.1-201ENST00000603405 233 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 AL163642.2-201ENST00000604722 1019 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS35Q96QK1 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS35Q96QK1 AL158211.2-201ENST00000607282 395 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 AC016542.1-201ENST00000608259 493 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS35Q96QK1 AC034229.5-201ENST00000624258 185 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS35Q96QK1 AC244205.2-202ENST00000635781 342 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 AL590396.4-201ENST00000636779 956 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VPS35Q96QK1 SAGE4P-201ENST00000442271 3381 ntBASIC3.69□□□□□ -1.82
VPS35Q96QK1 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VPS35Q96QK1 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 AC006504.1-201ENST00000562493 3666 ntBASIC3.68□□□□□ -1.82
VPS35Q96QK1 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VPS35Q96QK1 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS35Q96QK1 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
VPS35Q96QK1 RNU6-444P-201ENST00000383988 108 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms