Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
LINC00643Q86TS7 AC012321.1-201ENST00000561622 1588 ntBASIC1.79□□□□□ -2.12
LINC00643Q86TS7 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
LINC00643Q86TS7 AC026241.1-201ENST00000517873 2142 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 ZNF734P-201ENST00000419494 1534 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
LINC00643Q86TS7 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
LINC00643Q86TS7 RNU6-799P-201ENST00000363567 107 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
LINC00643Q86TS7 DEFB109C-201ENST00000382575 264 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 DEFB109B-201ENST00000382656 264 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 RNA5SP210-201ENST00000391034 120 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 RPL7P60-201ENST00000397636 735 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 CYCSP19-201ENST00000411715 316 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 AC098592.2-201ENST00000413158 265 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 AL513477.1-202ENST00000417061 214 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC1.78□□□□□ -2.12
LINC00643Q86TS7 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC1.78□□□□□ -2.12
LINC00643Q86TS7 TRMT2B-AS1-201ENST00000443801 205 ntTSL 5 BASIC1.78□□□□□ -2.12
LINC00643Q86TS7 PRDX3P3-201ENST00000447765 522 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC1.78□□□□□ -2.12
LINC00643Q86TS7 MTND2P28-201ENST00000457540 1044 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 snoU13.1-201ENST00000459157 104 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 COPS8P2-201ENST00000473228 627 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
LINC00643Q86TS7 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC1.78□□□□□ -2.12
LINC00643Q86TS7 AC104619.4-201ENST00000510773 249 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 RNA5SP362-201ENST00000516048 118 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 IGKV2-18-201ENST00000522607 343 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 SUB1P1-201ENST00000524415 382 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 OSBPL9P3-201ENST00000534523 595 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 AC087241.2-201ENST00000535801 324 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 CYCSP30-201ENST00000546447 172 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.78□□□□□ -2.12
LINC00643Q86TS7 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC1.78□□□□□ -2.12
LINC00643Q86TS7 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC1.78□□□□□ -2.12
LINC00643Q86TS7 RPL12P25-202ENST00000598100 674 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 AC034236.3-201ENST00000605999 461 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 VN1R7P-201ENST00000619242 903 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 AC006111.3-201ENST00000622137 383 ntBASIC1.78□□□□□ -2.12
LINC00643Q86TS7 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC1.78□□□□□ -2.12
LINC00643Q86TS7 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.13
LINC00643Q86TS7 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AP004289.2-201ENST00000444413 1457 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC091564.4-201ENST00000533934 2194 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 MIR431-201ENST00000385266 114 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 MIR765-201ENST00000390226 114 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 SNORA57.1-201ENST00000391227 145 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 RPL7P25-201ENST00000404151 721 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AL034374.1-201ENST00000406329 351 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 U3.42-201ENST00000408746 214 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 DBIP2-201ENST00000419076 262 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC244098.2-201ENST00000422068 99 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 COX6CP15-201ENST00000426313 211 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 MTATP6P4-201ENST00000427725 675 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC008065.1-201ENST00000428525 348 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 DNAJC19P7-201ENST00000428811 344 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 HMGB1P25-201ENST00000468402 607 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 RN7SL717P-201ENST00000478343 297 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 RPL7P38-201ENST00000488396 739 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC090096.1-201ENST00000489168 390 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 SNORA31.1-201ENST00000515993 133 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 SNORA31.5-201ENST00000516190 133 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 RNU6ATAC24P-201ENST00000516811 135 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 IGHVIII-11-1-201ENST00000522733 267 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 PTS-202ENST00000524931 696 ntTSL 3 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 OR5BN1P-201ENST00000532955 829 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 C1GALT1P1-201ENST00000548895 1089 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 RPL21P12-201ENST00000559810 515 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC120057.2-201ENST00000571520 271 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AL161756.2-201ENST00000604597 246 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 ACTR3BP1-201ENST00000605584 1247 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC008083.4-201ENST00000615076 444 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms